Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g262 ATGGAGAGATTATACAATGAAGGGGGGGAGGGTGGTGGGATAAAGAGGGAGATTGCCACCTTGAAACTCCTCAAACATCCAAACGTGGTCAGATTACATGAGGTCTTGGCAAGCAAAACCAAGATTTACATGGTCCTTGAGTATGTGACTGGCGGCGAATTGTTTGACAGAATTGCATCCAATGGGAAACTTTCAGAAGCTGAAGGCAGGAAACTCTTCCAACAGTTGATTGATGCTGTGAGCTATTGCCACAACAAAGGTGTTTTCCATAGGGATCTCAAGCTAGAGAATGTTCTTGTTGATTCAAAAGGAAACATAAAGATCTCTGATTTTGGCCTCAGTGCCTTACCACAGCATTTTAGGGATGATGGGTTGTTGCATACAACCTGTGGAAGTCCAAACTACGTTGCACCAGAGATTCTTGCAAATAGAGGTTACGACGGTTCAACTTCTGACATTTGGTCATGTGGTGTCATCTTATACGTGATTCTTACAGGGTATCTCCCTTTTGATGATAGAAATCTTGCTGTTCTCTATCAGAAGATTTTCAAGGGGGATGCTCAGATGCCCAAATGGCTGTCATCAGGTGCCAAGAACATTATAAAGAGAATTCTTGACCCCAAACCTGAAACCCGAATAACAATGGCAGGGATCAAAGCAGATGAATGGTTCAAGCAACAGTATACACCAGCTTATCCCGAAGAGGAAGAAGAAGATATTCATGTGGATGATGAAGCTTTCTCAATATATGAGCCAATGGAAGCAAAGAAGAGTCCAGGCTCACCCAACCTCATCAATGCCTTCCAGCTGATTGGAATGTCCTCATGCCTTGATCTCTCTGGTTTCTTTGAGAAAGAGGATGTGTCAGAGAGGAAAATCAGATTTACCTCAAATCATTGCCCAAAAGATTTACTTGAGAAGATTGAGGATATTGTCACAGAGATGGGATTTCGAGTAGAGAAGAAAAATGGAAGGCTTAAAGTGATGCAAGAGCATAAGTGTCAGAAAAGCTTTGGGAGTCTTTCCGTGGCAGCAGAGGTGTTTGAAATAAGCCCATCCTTGTATGTAGTTGAGTTGAGAAAATCTTATGGGGATTCTTCTGTTTATAGACAGTTGTGTAAAAAGCTATCAAGTGATCTGGGTGTTCCTACCAGCCAAGAGCTATTGAAAGTTTGA 1176 42.18 MERLYNEGGEGGGIKREIATLKLLKHPNVVRLHEVLASKTKIYMVLEYVTGGELFDRIASNGKLSEAEGRKLFQQLIDAVSYCHNKGVFHRDLKLENVLVDSKGNIKISDFGLSALPQHFRDDGLLHTTCGSPNYVAPEILANRGYDGSTSDIWSCGVILYVILTGYLPFDDRNLAVLYQKIFKGDAQMPKWLSSGAKNIIKRILDPKPETRITMAGIKADEWFKQQYTPAYPEEEEEDIHVDDEAFSIYEPMEAKKSPGSPNLINAFQLIGMSSCLDLSGFFEKEDVSERKIRFTSNHCPKDLLEKIEDIVTEMGFRVEKKNGRLKVMQEHKCQKSFGSLSVAAEVFEISPSLYVVELRKSYGDSSVYRQLCKKLSSDLGVPTSQELLKV* 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2672327 2676586 - Vvi5g262 Vvi5g262 786404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g262 391 PANTHER - 14 384 - -
Vvi5g262 391 SMART serkin_6 2 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g262 391 ProSitePatterns Serine/Threonine protein kinases active-site signature. 88 100 IPR008271 GO:0004672|GO:0006468
Vvi5g262 391 PANTHER CBL-INTERACTING PROTEIN KINASE 21 14 384 - -
Vvi5g262 391 Pfam NAF domain 262 321 IPR004041 GO:0007165
Vvi5g262 391 CDD CIPK_C 266 380 - -
Vvi5g262 391 Pfam Protein kinase domain 14 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g262 391 SUPERFAMILY Protein kinase-like (PK-like) 14 242 IPR011009 -
Vvi5g262 391 ProSiteProfiles NAF domain profile. 260 284 IPR018451 GO:0007165
Vvi5g262 391 Gene3D Transferase(Phosphotransferase) domain 1 6 266 - -
Vvi5g262 391 Gene3D Kinase associated domain 1, KA1 267 382 - -
Vvi5g262 391 ProSiteProfiles Protein kinase domain profile. 1 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76658 PF00069 Pkinase 6.90E-60 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g262 K07198 - vvi:100259621 763.066