Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g266 ATGTACGTAGCAGCTTCGGCGGCGGAGGGTTTGAGCAGATGGGGTGTGTACAGGGAGCTTCCAATGGCAGCGGCGCCCATGGCTAAAACGACGTCGTTCTATCGCCGGAACCCTCCTCTTGATCGCGTTTCTCTCGTCCGCGCCAAACCTTCCTTTTCCTGTTTCTGTGCTCTCGCCGGAGACGATGTGTTTTCGGTCACATCAGCCACTCAGTTCGACGTCGATTATCTGGGGCAGAGCACCAAGGGTGATTTGAATGTCAAATCCGACCATCTGGACTCTTTTGGCCTTGGAGGTCGATCAGCCTTGGAGGGTCCAATTGAGGAAGTTGCCAGGGCGGAAGCTGGAGAGGCTGAGGATTTGCTTCGCCACTTGGGTATCCCGGGTCCTTTTTCATCAAGATATTCACCACGTGGCATATTTTGTAGCCGTACATTGAATCTTCGGTCAATCAGTGCCATTGGATATGACATGGACTACACCTTGATGCACTATAATGTGATGGCTTGGGAAGGACGGGCGTATGAATATTGTATGGACAACCTAAGGAACATGGGGTTTCCTGTGGATGGACTTGCATTTGACCCAAACTTGGTTATTAGAGGCCTTGTAATAGACAAAGAGAAAGGAAACTTGGTTAAGCCTGACAGATTTGGCTATGTAAAAAGGGCTATGCATGGTACAACAATGCTAAGTACTCGAGCTGTAACTGAGATGTATGGGAGGGAACTGGTGGATCTGCGAAACGAAAGTCGATGGGTATTCCTCAATACACTATTCTCTGTTTCAGAAGCAGTGGCTTTTATGCAGATGGTGGACAGATTAGATGAAGGAGCTATATCTGCAGAAATTGCTCCACTTCATTATAAAGGACTTTACAAGGCTGTTGGAAAGGCCCTCTTCAAGGCACATGTAGAAGGCCAACTTAAGCATGAGATAATGTCCAAGCCTGAATTGTTTGTTGAGCCTGATCCGGAGATGCCTTTGGCACTCTTGGATCAAAAAGAGGCTGGCAAAAAGCTTTTGCTTATTACCAACTCAGATTATCATTATACAGACAAAATGATGCAGCATTCCTTTAACAAATTCCTTCCAAATGATATGGGCTGGCGAGATCTATTTGACATGGTTATAGTCTCTGCGAGGAAGCCAGAGTTCTTCCAAATGTCACACCCATTGTATGAGGTGGTGACAGATGAGGGTCTAATGCGTCCATGCTTCAAGGCTTGTACAGGGGGCTTATACTCAGGAGGGAGTGCTCAGATGATTGAAAATTCCCTTAAAATCCATGGAGATGAGATTTTGTATGTCGGTGACCACATTCATACAGATGTAAGCCAATCAAAAGTACATCTGCGTTGGCGGACGGCTTTGATTTGTCGAGAACTTGAAGAAGAGTATAATGCATTGATTCGTAGTAGCAGTCATCGGGCCACACTGATAGACCTTATAAATCAGAAGGAAGTTGTAGGAGATCTATTTAACCAACTTCGACTTGCTTTGCAAAGGCGAACCAAGGGGCGGCCTGCTCAAACTCTTGCTGCAACTAATATGGATAATCAAGGACTCACTGAGACCATGCAGAAGCTACTTCTTGTTATGCAAAGATTAGACGAAAAAATTGCACCAATGTTAGATGCTGATGGAGAGCACTTTAGCAAAAGGTGGGGCTTTCTTTCACGTGCGGGTCTTTGGGATAAAAGTCACTTGATGAGACAAATTGAAAAGTATGCTGATATTTACACCTCTAGGGTCTCAAATTTCCTACATTATACACCCTTTATGTATTTTCACTCACAGGAACAGACTCTCGCTCATGATTCATACTCTTGGTACCAGTCACAATTTAATGGACTGATGTTAAAGACCAGAGTTAAACCAGAAGATCATCCTGTTAAATTTGCTGATAGCAATGATGGTCATTGA 1926 44.76 MYVAASAAEGLSRWGVYRELPMAAAPMAKTTSFYRRNPPLDRVSLVRAKPSFSCFCALAGDDVFSVTSATQFDVDYLGQSTKGDLNVKSDHLDSFGLGGRSALEGPIEEVARAEAGEAEDLLRHLGIPGPFSSRYSPRGIFCSRTLNLRSISAIGYDMDYTLMHYNVMAWEGRAYEYCMDNLRNMGFPVDGLAFDPNLVIRGLVIDKEKGNLVKPDRFGYVKRAMHGTTMLSTRAVTEMYGRELVDLRNESRWVFLNTLFSVSEAVAFMQMVDRLDEGAISAEIAPLHYKGLYKAVGKALFKAHVEGQLKHEIMSKPELFVEPDPEMPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNKFLPNDMGWRDLFDMVIVSARKPEFFQMSHPLYEVVTDEGLMRPCFKACTGGLYSGGSAQMIENSLKIHGDEILYVGDHIHTDVSQSKVHLRWRTALICRELEEEYNALIRSSSHRATLIDLINQKEVVGDLFNQLRLALQRRTKGRPAQTLAATNMDNQGLTETMQKLLLVMQRLDEKIAPMLDADGEHFSKRWGFLSRAGLWDKSHLMRQIEKYADIYTSRVSNFLHYTPFMYFHSQEQTLAHDSYSWYQSQFNGLMLKTRVKPEDHPVKFADSNDGH* 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2701608 2715812 - Vvi5g266 Vvi5g266 786408

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g266 641 Coils Coil 520 540 - -
Vvi5g266 641 CDD HAD_cN-II 141 463 - -
Vvi5g266 641 TIGRFAM HAD-IG-Ncltidse: HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase 140 478 IPR008380 -
Vvi5g266 641 PANTHER 5'-NUCLEOTIDASE DOMAIN-CONTAINING 57 614 IPR008380 -
Vvi5g266 641 Gene3D - 300 490 IPR023214 -
Vvi5g266 641 PANTHER HAD-SUPERFAMILY HYDROLASE, SUBFAMILY IG, 5'-NUCLEOTIDASE 57 614 - -
Vvi5g266 641 Pfam 5' nucleotidase family 140 608 IPR008380 -
Vvi5g266 641 SUPERFAMILY HAD-like 137 609 IPR036412 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g266 - - - vvi:100249396 1295.8
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g266 Blo01g00017 . . . . . . Bma05g00981 . . . . . . . . . . . . . . . . Cla06g00386 . Cec06g0417 . . . . . Cone15ag0684 . . . . . . . . . . Bpe05g00790 . . . Sed11g1035 . . . . . . Cpe12g00353 . Bhi12g02006 Tan06g2823 Cmetu03g0819 Lac11g1075 Hepe03g0003 . Lcy12g0924 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012890 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28