Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g271 ATGGAAACGGAAGATTGGGATTTGAGTGCGGAGGAACTTGATTCACTCGAACGAGACGCTTTCAGACAGATTGCTCTCCGCAATTCTTCTTCTTCCACCGCTTCCGTTTCCAATAACTCCATTCACTCCTCCAACCCCAACCCCAACCCCATCATTCCTTCTCTTCCCCGCAAGGTAGATGATTTGCCCCCTGGGTCCAGAATACCACCCCCATCTACAGTAGTCAGTAACTGCTCAAAGGAACTCCACAAGCTCTCTGTCAAGTTTTTTCTTCATGCTAGTGGAAATATTGCTGCAAAATTTTCATACGACCCGGTAGTTGTGGGTGCGTTCCGAAAGATATCCAAAGCCAGTTGGAATGCAAAAGAAAGATTATGGATGTTCCCTTTATCTTCTTTGTCGTCAGCTGAAAAGGTTCTCCATGAAATAACCGGTATCAATGTTGAGATAGAGAACATAGATCCCTTGGTGCGGCGAGCGATTGATGCTGCTACAGCTGTTCCAGATCTTCGAGATCGATATGATAGGATCCCAAGTTACATCGAAACAAAGCTTCTGCCATTCCAGCGTGATGGTATTAGGTTTGTATTGCAGCATGGAGGTCGTGTCCTTCTAGCAGATGAGATGGGACTGGGAAAGACCCTACAGGCCATTGCTGTAACAACTTGCGTTCGTGACTCATGGCCTGTTCTTGTTCTTACCCCTTCTTCTTTACGTTTGCATTGGGCTTCTATGATCCAACAATGGTTGAATATCCCATCATCAGATATCCTTGTAGTTTTATCTCAGTGGAGTGGATCTAACAGGGGTGGATTCAGAATTGTACCCTCAAACACGAAGGGCACTATTCATCTGGATGGTGTGTTCAACATTATCTCCTACGATGTTGTCCTTAAGTTACAGAAAATACTAGCAGAATCAGAGTTTAAGGTTGTGATTGCAGATGAGTCACACTTCTTGAAGAATGCTCAAGCAAAGAGAACAAGTGCTTCCCTTCCAGTTTTACAGAAAGCTCAATACACAATTTTGCTCAGTGGAACTCCTGCTTTATCACGGCCGATTGAGCTATTCAAGCAGCTTGAAGCCTTGTATCCGGATGTATATAGGAATGTTCACGAATATGGTAATCGATATTGCAAGGGTGGTGTATTTGGAATGTATCAAGGTGCAAGTAACCATGAAGAATTGCACAACCTGATGAAAGCAACTGTGTTGATCCGCAGGCTTAAAAAAGATGTACTGTCTGAGCTTCCTGTGAAACGCAGGCAACAGGTCTTCCTAGATTTGGATGAAAAGGACATGAAACAAATCAACGCTTTATTTCGTGAGTTGGAGGTGGTAAAAAGCAAAATCAAGGCCAGCAAATCCAAAGAGGAGGCTGAATCACTAAAATTTTCTGAGAAAAATCTTATTAATAAGATATATACCGACTCTGCACAAGCCAAGATTCCAGCAGTCCTAGATTACCTGGGAACTGTTGTTGAGGCAGGCTGCAAGTTTCTAATATTTGCACACCATCAGCCGATGATTGATTCAATCTTCCAGTTTCTTGTGAAGAAAAAGGTTGGTTGCATTCGAATTGATGGCAGTACTCCTTCATCATCAAGGCAGGCTTTTGTTACAGATTTTCAGGAAAAAGATACTATTAAGGCAGCAGTGCTATCTATCAAAGCTGGAGGTGTTGGGTTAACTTTGACAGCTGCAAGCACAGTTATTTTTGCAGAATTGTCTTGGACTCCAGGCGACTTAATTCAAGCAGAAGACCGTGTCCATAGGATTGGCCAGGTGTCATCGGTTAATATACACTACCTGCTAGCAAATGACACAGTCGATGACATAATATGGGATGTTGTCCAGAGCAAGTTGGAAAATCTGGGACAGATGCTTGATGGCCACGAAAATACCTTGGAAGTTTCAGTCAGCCAGCCAAGAAGTAGCCCTTCAAAGCAGAGAACAATAGACTCTTTCATGAAGCGCTGTAACAATGTGGACAACCCAGAGCATCAGCCCAATCTCAAACACCCCAGAAACTGA 2034 43.41 METEDWDLSAEELDSLERDAFRQIALRNSSSSTASVSNNSIHSSNPNPNPIIPSLPRKVDDLPPGSRIPPPSTVVSNCSKELHKLSVKFFLHASGNIAAKFSYDPVVVGAFRKISKASWNAKERLWMFPLSSLSSAEKVLHEITGINVEIENIDPLVRRAIDAATAVPDLRDRYDRIPSYIETKLLPFQRDGIRFVLQHGGRVLLADEMGLGKTLQAIAVTTCVRDSWPVLVLTPSSLRLHWASMIQQWLNIPSSDILVVLSQWSGSNRGGFRIVPSNTKGTIHLDGVFNIISYDVVLKLQKILAESEFKVVIADESHFLKNAQAKRTSASLPVLQKAQYTILLSGTPALSRPIELFKQLEALYPDVYRNVHEYGNRYCKGGVFGMYQGASNHEELHNLMKATVLIRRLKKDVLSELPVKRRQQVFLDLDEKDMKQINALFRELEVVKSKIKASKSKEEAESLKFSEKNLINKIYTDSAQAKIPAVLDYLGTVVEAGCKFLIFAHHQPMIDSIFQFLVKKKVGCIRIDGSTPSSSRQAFVTDFQEKDTIKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRVHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKLENLGQMLDGHENTLEVSVSQPRSSPSKQRTIDSFMKRCNNVDNPEHQPNLKHPRN* 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2751283 2771189 - Vvi5g271 Vvi5g271 786413

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g271 677 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 408 IPR027417 -
Vvi5g271 677 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 486 637 IPR001650 -
Vvi5g271 677 MobiDBLite consensus disorder prediction 29 48 - -
Vvi5g271 677 Gene3D - 159 432 IPR038718 -
Vvi5g271 677 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A-LIKE PROTEIN 1 2 663 IPR030101 GO:0006281|GO:0031297|GO:0036310
Vvi5g271 677 CDD SF2_C_SNF 481 605 - -
Vvi5g271 677 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 2 663 - -
Vvi5g271 677 SMART helicmild6 511 594 IPR001650 -
Vvi5g271 677 Pfam SNF2-related domain 204 462 IPR000330 GO:0005524|GO:0140658
Vvi5g271 677 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 194 366 IPR014001 -
Vvi5g271 677 CDD DEXHc_HARP_SMARCAL1 185 408 - -
Vvi5g271 677 ProSiteProfiles HARP domain profile. 81 155 IPR010003 -
Vvi5g271 677 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 307 636 IPR027417 -
Vvi5g271 677 Gene3D - 442 669 IPR027417 -
Vvi5g271 677 Pfam Helicase conserved C-terminal domain 485 594 IPR001650 -
Vvi5g271 677 MobiDBLite consensus disorder prediction 29 72 - -
Vvi5g271 677 SMART ultradead3 181 374 IPR014001 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g271 K14440 SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-] - vvi:100264852 1279.62
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g271 . . . . . . . . . . . . . . . Cpe08g00131 . . . . . . . . . . . . . . . . . . . . Csa06g01540 . . . . . . . . . . . . . . . . . . Cpe17g00093 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006351 1 6 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 3 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14833 PF00176 SNF2_N 1.90E-28 CL0023 Vvi TR