Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g272 ATGAGGCTGAAGTATATTCTGGTAGCCAACTGTTTGTTATGGGCTTGGGCGTGCTGCTTAGCTCTGGATGATTCCTCTGATGGGTTGGTGAGGATTGGTCTGAAGAAGAAGCCATTGGACCTTGCCAGGCTTCATGCTGCAAGAATCACGAGAGGGAATGGTTTTCATGCCCAAGGCCTGGGTAAAGTCGACGATAATTATCCGAAAGCGAATACAGTATACTTAAAGAACTATATGGATGCTCAATACTATGGAGAGATTGGCATTGGTTCTCCTCCACAAACCTTCTCGGTTGTCTTCGATACAGGCAGCTCCAATCTCTGGGTCCCCTCCTCAAAATGCTACTTTTCTATTGCTTGCTATTTCCATGCTAGGTACAGAGCTGTGCTGTCCAGGACATATTCCAAGAATGGAAGACATTGCAAAATCAATTATGGCTCTGGGTCCATTTCTGGCTTCTTCAGCCAAGACCATGTGCAGATTGGGGAAATTGTGATAAAAAATCAGGTGTTCACTGAGGCCACAAAAGAAGGGCTTTTTGCATTCTCGCTTGCTCAGTTTGATGGCATACTTGGGCTTGGATTTCAGAACGCATCTGTTGGAAAAATTCCACCAATTTGGTACAATATGGTGCAACAAAGCCTTGTAAGCATGGAAATCGTCTCCTTTTGGCTCAATCGAGATCCAAAGGCAAAGATAGGAGGTGAAGTTATTTTTGGTGGCGTTGATTGGAGGCACTTTATGGGTGATCATACTTTTGTCCCAATTACCAGGAAGGATTACTGGCAGATTGAGGTGGGAGATATTTTGATTGCAGGCTCTTCAACAGGTTTTTGTGAGGGAGGCTGTGCTGCCATTGTGGATACAGGAACATCCATGATTGCTGGTCCAACAACTGTTGTGACACAAATCAACCATGCCATTGGAGCAGAAGGAATTGTGAGCTTCAATTGTAAAAATGTTGTCAATAAGTATGGGCGATTGATATGGCAGTTCTTGGTCTCAGGGTTCCAACCCGAAAATGTATGCTCAGATATTGGACTCTGTGCATATAATGGAACTAAGAATGCAAGTGCTGGTATGGAAACAGTGATTGGAAATGGGGACAATGCTGCATGTACTTTCTGTGAGATGATTGCTTTCTGGATCCAAGTACAACTTAAAGAACATAAAGCCAAGGAAAAAGTGTTTCAATATGTGAATGAGCTGTGTGAGAACCTCCCGAATCCGGGCGGAAAAGACTTTGTCAACTGCGATGCACTTGCAACCATGCCAGTCATTTCATTCGCTATAGGAGATAAATACTTTCCCCTCACTGCAGAACAGTATACTCTTAAAGTTGAAGTAAACTGTACCACTGTCTGCCTTAGTGGGTTTACTGCTTTGGATGTGCCTCGCCCAGATGGTCCCCTTTGGGTTCTGGGAGATGTGTTCTTGGGAGCATACCACACAATCTTTGATTTTGGCAATCTTCAAGTAGGCTTTGCGAAATCTATTCTTTAA 1503 43.78 MRLKYILVANCLLWAWACCLALDDSSDGLVRIGLKKKPLDLARLHAARITRGNGFHAQGLGKVDDNYPKANTVYLKNYMDAQYYGEIGIGSPPQTFSVVFDTGSSNLWVPSSKCYFSIACYFHARYRAVLSRTYSKNGRHCKINYGSGSISGFFSQDHVQIGEIVIKNQVFTEATKEGLFAFSLAQFDGILGLGFQNASVGKIPPIWYNMVQQSLVSMEIVSFWLNRDPKAKIGGEVIFGGVDWRHFMGDHTFVPITRKDYWQIEVGDILIAGSSTGFCEGGCAAIVDTGTSMIAGPTTVVTQINHAIGAEGIVSFNCKNVVNKYGRLIWQFLVSGFQPENVCSDIGLCAYNGTKNASAGMETVIGNGDNAACTFCEMIAFWIQVQLKEHKAKEKVFQYVNELCENLPNPGGKDFVNCDALATMPVISFAIGDKYFPLTAEQYTLKVEVNCTTVCLSGFTALDVPRPDGPLWVLGDVFLGAYHTIFDFGNLQVGFAKSIL* 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2775452 2778471 + Vvi5g272 Vvi5g272 786414

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g272 500 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 6 498 IPR001461 GO:0004190|GO:0006508
Vvi5g272 500 PRINTS Pepsin (A1) aspartic protease family signature 89 109 IPR001461 GO:0004190|GO:0006508
Vvi5g272 500 PRINTS Pepsin (A1) aspartic protease family signature 235 248 IPR001461 GO:0004190|GO:0006508
Vvi5g272 500 PRINTS Pepsin (A1) aspartic protease family signature 285 296 IPR001461 GO:0004190|GO:0006508
Vvi5g272 500 PRINTS Pepsin (A1) aspartic protease family signature 472 487 IPR001461 GO:0004190|GO:0006508
Vvi5g272 500 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 285 296 IPR001969 GO:0004190|GO:0006508
Vvi5g272 500 SUPERFAMILY Acid proteases 12 497 IPR021109 -
Vvi5g272 500 Pfam Saposin-like type B, region 2 318 349 IPR008138 -
Vvi5g272 500 Gene3D - 313 408 - -
Vvi5g272 500 Gene3D Acid Proteases 30 241 IPR021109 -
Vvi5g272 500 CDD phytepsin 73 497 IPR033869 GO:0004190
Vvi5g272 500 Gene3D Acid Proteases 242 498 IPR021109 -
Vvi5g272 500 SUPERFAMILY Saposin 317 408 IPR011001 -
Vvi5g272 500 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 98 109 IPR001969 GO:0004190|GO:0006508
Vvi5g272 500 Pfam Eukaryotic aspartyl protease 82 497 IPR033121 -
Vvi5g272 500 ProSiteProfiles Saposin B type domain profile. 313 353 IPR008139 -
Vvi5g272 500 ProSiteProfiles Saposin B type domain profile. 369 410 IPR008139 -
Vvi5g272 500 Pfam Saposin-like type B, region 1 372 408 IPR007856 GO:0006629
Vvi5g272 500 PANTHER FUNGAL PROTEINASE A, ASPARTIC PROTEINASE SUPERFAMILY PROTEIN 6 498 - -
Vvi5g272 500 SMART sapb_4 277 349 IPR008139 -
Vvi5g272 500 ProSiteProfiles Peptidase family A1 domain profile. 83 496 IPR033121 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g272 K08245 E3.4.23.40; phytepsin [EC:3.4.23.40] - vvi:100251117 1034.63
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi5g272 Vvi14g27 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g272 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000456 7 5 6 5 6 2 4 2 4 3 2 4 3 3 3 4 4 6 3 4 3 3 3 3 3 3 3 5 5 5 116