Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g274 ATGGGTTTCCAGCTTGAGGAAATATCCCCAACCAAGGTCTCCGGTCGCCTTCCTGTTACCTCCAAGGCTTGCCAGCCATTTAAGGTGCTACACGGAGGGGTATCGGCGCTGATCGCAGAGGCGCTGGCCAGCATAGGAGCACACATGGCTTCAGGATACAGAAGGGTGGCTGGGATTCACCTCAGCATCAACCACTTGAAGCGTGCGGACCTGGGGGACCTCGTCTATGCAGAAGCCACCCCCGTTAACATCGGCAACACCATCCAGGTATGGGGCGTCCAGCTCTGGAAGATTGATCCCTCAAACTCAGAAATCAAGACCCTGATTTCATCATCTAGAGTTACTCTTGTATGCAACATGCCGGTGCCGGAGCATGCTAAAGCTGCCGGTGAAATTCTCAAGAAGTTTGCAAAATTATGA 420 52.86 MGFQLEEISPTKVSGRLPVTSKACQPFKVLHGGVSALIAEALASIGAHMASGYRRVAGIHLSINHLKRADLGDLVYAEATPVNIGNTIQVWGVQLWKIDPSNSEIKTLISSSRVTLVCNMPVPEHAKAAGEILKKFAKL* 140
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2781821 2783804 - Vvi5g274 Vvi5g274 786416

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g274 139 TIGRFAM unchar_dom_1: uncharacterized domain 1 2 95 IPR003736 -
Vvi5g274 139 Pfam Thioesterase superfamily 28 99 IPR006683 -
Vvi5g274 139 Gene3D Hotdog Thioesterase 1 119 - -
Vvi5g274 139 PANTHER 1,4-DIHYDROXY-2-NAPHTHOYL-COA THIOESTERASE 1 1 139 - -
Vvi5g274 139 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 1 117 IPR029069 -
Vvi5g274 139 CDD PaaI_thioesterase 1 115 - -
Vvi5g274 139 PANTHER 1,4-DIHYDROXY-2-NAPHTHOYL-COA THIOESTERASE 1 1 139 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g274 K19222 menI, DHNAT; 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [EC:3.1.2.28] - vvi:100259669 276.559
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g274 . . . . . Bpe14g01074 . . . . . Cma14g01549 . Car14g01367 . . Cpe03g01296 . . . . . . . . . . . . . . . . . . Lsi05g01375 . . Cme06g00843 . . . . . Bpe13g00717 Bma02g00958 . . . Cmo14g01585 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001398 2 3 2 3 2 3 2 3 3 1 3 3 2 2 1 2 3 1 3 3 2 3 3 2 3 1 2 5 5 1 74