Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g282 ATGGGAGGAGGTGCAGCAACCCCACATTCATCGTCATCATCATCATCTTCTTCTTCATCATCCATAGATAGCATTAGCAACAACCATCCTTCTCTTTCCTCTGCTTCTTCTTCCATTTCCCTCCCACCAAACACGAAAAGATCAGGTTTGAGCACTGATCTAAGGCTCGGTCCTAGCATCTCGACCGCCCACATTCATCACTGCTCCTCCAGTGCCCCCAGTCCAAGGGACCAACGTGTTGACTGGCCGCCAATCAAGCCGTTGTTGAGGAGCACACTCACAGGGAAAGCAGATAACCAGCGCCAAGCCACTAACTTATTCGTAAAGGTTTACATGGAAGGCATTTCAATCGGACGGAAACTGGATCTGTTTGCCTACAGTGGTTACGATGGCTTAGTGGCAACCCTTAGCCATATGTTCAAAACCACCATCTTTTGCTCTGATCCTCATGTTGGTGGCGCTGATCATTCCGGAAAATATCATATCTTGACTTATGAAGACAAGGAAGGGGACTGGATGATGGTCGGAGATGTTCCTTGGGAGATGTTCTTAACCACTGTGAAGAGGCTGAAGATCACAAGAGCTGACAGATGCTAG 597 48.07 MGGGAATPHSSSSSSSSSSSSIDSISNNHPSLSSASSSISLPPNTKRSGLSTDLRLGPSISTAHIHHCSSSAPSPRDQRVDWPPIKPLLRSTLTGKADNQRQATNLFVKVYMEGISIGRKLDLFAYSGYDGLVATLSHMFKTTIFCSDPHVGGADHSGKYHILTYEDKEGDWMMVGDVPWEMFLTTVKRLKITRADRC* 199
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2845584 2846772 - Vvi5g282 Vvi5g282 786424

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g282 198 Gene3D - 99 198 - -
Vvi5g282 198 SUPERFAMILY CAD & PB1 domains 100 192 - -
Vvi5g282 198 MobiDBLite consensus disorder prediction 1 53 - -
Vvi5g282 198 Pfam AUX/IAA family 43 194 IPR033389 -
Vvi5g282 198 PANTHER AUXIN-RESPONSIVE PROTEIN IAA31 16 198 - -
Vvi5g282 198 ProSiteProfiles PB1 domain profile. 105 197 IPR000270 GO:0005515
Vvi5g282 198 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 16 198 IPR003311 GO:0005634|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g282 K14484 IAA; auxin-responsive protein IAA - vvi:100244346 363.614
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi5g282 Vvi7g494 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g282 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0020824 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 2 4
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14835 PF02309 AUX_IAA 2.70E-35 CL0072 Vvi TR