Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g284 ATGTCTCTTCCCAATCCCACCCCCTCGGCTTCCAGGAGTTACGAGCAGGAGGGATCATCTTCTTCTTCGCCTTGGAGGAGGCACACTGCCGATTCCTTCCCTCCTCTCAATATTCATTCTGACAACAAGCACAAAGTAGAAGACAGCGATGAAGATTTGTTCAGAGTTCCCGACGTGGAAGCGCAGCCCCCTTCGGATTCAACGCGAACCACCACCACCACCACAACAACAAATACTAGTAATAATCCAGAGGTTCAACAACAAACTAGCAGCGGCAAGCGCCGGAGGGGACGCAATCCTGTGGATAGGGAGTATAGAAGACTCAAGAGACTGCTGAGAAACAGGGTTTCTGCCCAACAAGCTCGAGAAAGAAAGAAGGTGTATGTGAATGATCTGGAGTCAAGAGCCCAGGAGTTGCAGGACAGGAACTCAAAACTAGAAGAGAAAATCTCAACTCTTGTTAACGAAAACACCATGCTCCGGAAGGTCCTCATGAACACTAGGCCTAAGATGGATGACAGTAGTACTGAGTCAAAGCATGATCAGTTGGGCAAGAGCTGA 561 49.02 MSLPNPTPSASRSYEQEGSSSSSPWRRHTADSFPPLNIHSDNKHKVEDSDEDLFRVPDVEAQPPSDSTRTTTTTTTTNTSNNPEVQQQTSSGKRRRGRNPVDREYRRLKRLLRNRVSAQQARERKKVYVNDLESRAQELQDRNSKLEEKISTLVNENTMLRKVLMNTRPKMDDSSTESKHDQLGKS* 187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2859891 2863796 + Vvi5g284 Vvi5g284 786426

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g284 186 SMART brlzneu 102 166 IPR004827 GO:0003700|GO:0006355
Vvi5g284 186 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 1 186 IPR044280 GO:0000981|GO:0045944
Vvi5g284 186 PANTHER TRANSCRIPTION FACTOR HY5-LIKE 1 186 - -
Vvi5g284 186 MobiDBLite consensus disorder prediction 166 186 - -
Vvi5g284 186 Pfam bZIP transcription factor 103 162 IPR004827 GO:0003700|GO:0006355
Vvi5g284 186 MobiDBLite consensus disorder prediction 63 94 - -
Vvi5g284 186 MobiDBLite consensus disorder prediction 1 28 - -
Vvi5g284 186 SUPERFAMILY Leucine zipper domain 105 165 IPR046347 GO:0003700|GO:0006355
Vvi5g284 186 Coils Coil 122 156 - -
Vvi5g284 186 CDD bZIP_HY5-like 116 157 - -
Vvi5g284 186 MobiDBLite consensus disorder prediction 1 105 - -
Vvi5g284 186 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 104 167 IPR004827 GO:0003700|GO:0006355
Vvi5g284 186 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 109 124 IPR004827 GO:0003700|GO:0006355
Vvi5g284 186 Gene3D Single helix bin 125 166 - -
Vvi5g284 186 MobiDBLite consensus disorder prediction 38 57 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g284 K16241 HY5; transcription factor HY5 - vvi:100261472 335.495
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g284 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0069791 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14836 PF00170 bZIP_1 2.00E-11 CL0018 Vvi TF