Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g287 ATGGAGACAGGCAGAAGAAGGGTTTCTCGGGGCATGCTGCCGCTGCTAGCGCTTCACACAGCGAACGAGTATTACAGGGTGGGATGGAAGCCCCCTGTCACCGCCGGCCTTCTTGCTGCCAACACCCTCATTTATTTAAGGCCCTCTTTCATCGATTCCATGCTCCCCACCATCGACAAAGTCTGGTTCAATCCCCACCTCATCCTCAAGCACAAGGATCTCAAGCGCTTCCTCTTGTCACCATTCTACCACATGGATGAAGCTCACCTGGTTTACAACATGATGTCACTCTTATGGAAAGGAATCCAGTTAGAAACTTCAATGGGGAGCGCTGAATTTGCATCTATGGTTGCCACACTACTTGGTATGTCCCAGGGTATCACACTGCTGCTAGCCAAATCCCTACTTCTGTTCTTTGATTATGAGAGAGCTTACTACTCCCAATTTGCGGTTGGATTCTCTGGGGTTCTCTTTGCCATGAAGGTCGTCCTTAATTCACAGTCAGCAGACTACACTTATGTCCATGGATTGATAGTACCAACACGTCATGCCGCCTGGGTTGAGCTGATTCTCATCCAAATGTTTGTACCTGGTGTCTCATTCCTTGGCCACCTTGGTGGAATACTCGCAGGAATTCTCTATCTTCGGTTGAAGGGTACATATTCAGGTTCTGATCCACTGACTATTCTGTTTAAAGGACTTGCTGATGCATTAAGCTGGCCTCTGAGGTTTGCTCAAGGCTTGTTTCGGAGACGGCGGATCTCTGGCAGGGGAACTGTTGGTGGGCGTCAGACAAGGAGGACATCTGGTGTTTGGAGATGTTGGTCATGTACATACGATAATCCTGGTGGGTTAAGCATTTGTGAGATGTGTGGCACAGCTAGGAACGGCAATGGATTATCATCATCCCTTCAATGGCCACGTCAATCTCATGAGCTTCCTTTGGATGAATTACGCCGCAGAAGACTGGAAAGGTTTGGTAGATGA 987 48.53 METGRRRVSRGMLPLLALHTANEYYRVGWKPPVTAGLLAANTLIYLRPSFIDSMLPTIDKVWFNPHLILKHKDLKRFLLSPFYHMDEAHLVYNMMSLLWKGIQLETSMGSAEFASMVATLLGMSQGITLLLAKSLLLFFDYERAYYSQFAVGFSGVLFAMKVVLNSQSADYTYVHGLIVPTRHAAWVELILIQMFVPGVSFLGHLGGILAGILYLRLKGTYSGSDPLTILFKGLADALSWPLRFAQGLFRRRRISGRGTVGGRQTRRTSGVWRCWSCTYDNPGGLSICEMCGTARNGNGLSSSLQWPRQSHELPLDELRRRRLERFGR* 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2877561 2880014 + Vvi5g287 Vvi5g287 786429

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g287 328 Pfam Rhomboid family 70 217 IPR022764 GO:0004252|GO:0016021
Vvi5g287 328 ProSitePatterns Zinc finger RanBP2-type signature. 272 291 IPR001876 -
Vvi5g287 328 SUPERFAMILY Ran binding protein zinc finger-like 269 295 IPR036443 -
Vvi5g287 328 Gene3D - 27 220 IPR035952 -
Vvi5g287 328 SUPERFAMILY Rhomboid-like 30 217 IPR035952 -
Vvi5g287 328 Gene3D - 265 325 - -
Vvi5g287 328 SMART zf_4 270 294 IPR001876 -
Vvi5g287 328 ProSiteProfiles Zinc finger RanBP2 type profile. 268 297 IPR001876 -
Vvi5g287 328 PANTHER RHOMBOID PROTEIN 2 3 325 - -
Vvi5g287 328 PANTHER RHOMBOID-RELATED PROTEIN 3 325 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g287 K09651 RHBDD1, RHBDL4; rhomboid-related protein 4 [EC:3.4.21.105] - vvi:100244285 610.527
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g287 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .