Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g291 ATGGAAGAGGTCATATCTGGAATACTCACGGACCTTGAAGCCCACTCCACAGCCAGCCTCTCTGACCCAAACCCTCCACTACCCATCTCCCAATCCACCCTCTCGGATCTCCAAACTCTGCTCGACAACGCCATGGCAACCGAGGACTCACATCACATTGACCGCCTCTTCGAAGACCTCTCATCCAGAAACCTCTCGATCTCCTCTCTCATTCGCCCTATGGCCTCTGCCATGGACTCAAGCCCCACCGACATCTCCCTCTTGGCCTCCAGAGTCTACCTCTCCTTGCTTCTCTCCCTGAATGCACCTGTTTTCACCCTCTTCACTCCCATGGCTTTTCTTTCTCTTCTTCGCTCTATTCGTCAGTGTTTCAAGAATCGAAAAATGGGTCCTCCTCGGTTCGGTGAGTCGAGTCGGGGCTCGTACGCGGCGGCGTATAGAAAGAGGAAGGGGGGTGGGCGGGCAAGGGGTGTTAGGAGTCGGGTGAGGGAGTCTTTGGTTCAGACCGTGGCCGAGATTCCTGCCATGGCGCTTGAATTGTGTGGTAACACAGCAAGTTTTGATAAATTAACCCATTTGTGTTCCCGGGTCTTGACTGAAGTTTTGAGTTCTGAGCATGGAGACCAGGCAACTACAGCGGCTGAGGTTTTGAAGTCGTTATCGCCTTTGATTCTGTTGGCTAAGTCGGAGGCTCGGACATTTGCATTGGGATTTATGATGAATCGGATGATGGGTATGGCTAAGGAGTTTGATGGTGTTAAGAAAGCAATCGTGAATCTTCCTAGGTATTTGTTGCAGAAGGCCCCTGAGAAGTCTGAGCCTCGGGCTTTGGCTGTGGAATCGGTGATGGAGATTGTTAAAACTATGGAATTTGAGGAGCAAATTGGGTTTGTAATGTATGTGGTGAAGATGACCCAAGGAAAGTCCCATTTCAGGCTTTTGGCGGTTGATCTTTTTCCCTTGCTTATAATGTCACTGAGGGACCCATTGGGGGTCAATACTGGAAATGAAGTCAAGAATTCATGGGGGTTGAATTGTTTGGAGGCTTTGATTCAGCGGTGCTCGGATGCTACTGCAGGGATTCGAGCTCGAGCTCTGACAAACCTGGCACAGATAGTGGGGTTCTTGTCCACTGATGATAGGAATCAGGTCATGTTGAAGGAAGGAATGGGCTTTGGCAGTTCATCACATCAGAAGCTGGAAGGTGGGGTGAATGATCTTTTGAGGAAAAGATGTATGGATGAGAAGGCAGCCGTGAGGAAGGCTGCACTTCTTCTAATTACCAAGTTGACGGGTCTTCTTGGTGGTGAATTTGTTGGAGACTTGCTCAAGACAATGGGCATGGCTTGTTCAGATCCGCTTGTTAGCATTAGGAAAGCAGCAATTTCAGCCCTATCTGAGGCTTTTAAAACATTCCCAGATGGGAATGTGACAACAGAGTGGCTACATTCTATTCCACGTTTAATAACTGATAATGAATCTAGCATTCAGGAAGAATGTGAGAACCTGTTTCTAGAACTGGTCTTGGATCGTGTGTCTAGAGCTGGATCCACTGTTTCAGCACACAAGAAATTGGTTTGTAATGATTTGAATGCCAAGACAAAAAGTCTAGAGATGGAAATTGAGCTTTTATTTCCTGGAGGAGTTTTGGTTCTGTTGAAAGAGATCTGTAATGGGGAGGTGGCACCTTGGGTGAAGAAGATCTGCACAAGCCTAGGAAAGAAGAAACGACTGAAGCCCAAAATTGCTGTTGCACTTCAGGGTATGATAAAGGCATCTGAGTCTCTGTGGTTGAGCCATTCCATGCCAATAGAAAAGTGGACAGCCCCTCCTGGGGCCTGGTTTCTTCTATCAGAGGTGTCAGAGTTCCTCTCAAAAGCAGTGGACTGGGAGTTCCTCCATCATCATTGGCAGCTCGTTGACAAGAATGGACCAGGGGTTGAATTTAGGAGCCCAGTACAAGATTTTGATGATGGGGTAGATTGCAGCATGTCCAATTCTGTTGCTTGGGCTGGAGATCGTGTTTTTCTATTGAAAACAATTTCCAATGTTTCTGTGGAACTGCCCCCTGAACCTGCTGCTGCTTTAGGTCACAACTTGCTTACACGGATTGAGGAGTTCAACATGCATTCAACTGAGGTTAACGCGCATGTAAAAGCACTCAGAACATTGTGCAAGAGACAGGTTTTAAATCCTGATGAGGCTGATGACCTTGTTCAGAAATGTGTACACAAACTTCTCTCTAAAGCTTCTCAGATTCTAGATAAGTACATTTCAGAGGCCTCAGAAGCAAATATAGACAGTGACTTTCGCACACCACCTGGAGGTGCAAGGAGGAAAGGCAGAACAGCATTGACCATGTCCAGATCATTGTCACGAGCAATTACCGCAGTTTATACTATCGGGTCTTTGGTTATCATTTGTCCTTCTGCTAATTTGGATGCCATTATTCCAATTTTACACACCATAATTACCTCCGGAAGTTCTGATACAAAATTGAATAAGTTACAAGGCAATACATTTCCCTTAAAGCAGGCAGCCCCTTCCTTGTACATTCATGCATGGGTGACAATGGGGAAAATCTGCCTTGCAGATGGGGAACTTGCAAAGAGATACATCCCTTTGTTTGTGCAGGAACTTGAGAAGAGTGACTGTGCAGCCCTCCGCAACAATATTGTAGTTACATTGGCAGATTTTTGTGTCCGGTACACTGCTTTAGTTGATTGTTATGTATCAAAGATCACAAAATGTCTTCGTGATTCATGCGAGCTTGTGAGAAGGCAGACATTTATACTTCTTTCTAGATTATTGCAGAGGGACTATGTGAAGTGGAGAGGAGTACTCTTCCTCCGATTCCTTTTATCTCTTGTTGATGAATCAGAAGAGATAAGGCGGCTTGCAGATTTCCTCTTTGGGAATATCTTGAAAGCCAAGGCACCTCTTCTAGCTTATAACAGTTTTGTTGAAGCCATTTTTGTTCTGAATGACTGCCATGTCCATAATGGAGGTAATGATTCTCAGAGTACGCAGACTGAAAGAGACCGTTTTTCTATTAGAGGTAATGATGAAAAGTCAAGATCTAAAAGAATGCACATCTATGTTTGTTTGCTGAAACAAATGGCCCCAGAGCACCTTTTAGCTACTTTTGCTAAGCTATGTGCTGAGATCCTTGCAGCTGCATCTGATGGCATGCTCAATATGGAAGATGTCCATGGACAGTCTGTCCTGCAGGATACTTTCCGAATTCTTGCCTGCAAAGAGATTCGTATCCCATCAACCCGTGGATCAACATCCGATTCAGCAGATGGGGAAGAAGAAGGCTTAGATGGTGGAGCAGCTTCTGAAGCTTCTGCTGCTAGAGGAAGGGCCATAACTCAAGCAGTTAAAAAGAGCCTTGTCCAAAACACCATTCCCATCTTCATAGAGCTGAAGCGGCTATTGGAGAGCAAGAACAGCCCCCTTACAGGTTCCCTCATGGAATGCTTACGAATTCTTCTCAAGGACTACAAGAATGAGATTGATGACATGTTGGTAGCTGATAAGCAGCTTCAGAAGGAGCTCATTTATGACATGGAAAAGTATGATGCAGCAAAGGCCAAATCCACGGCTGCTGCAGCTGTGGCAACCATGCAGCCATGTTATCGTTCCCCCCATGTTTCTAAAGTGGCTTCAGCAATGTCAGATGCAGTGGCTGCAGCCACAGTTCGATCAGTGCTCAAGGAAGTGAACAGGGGGTCTCCAACACCACCTTTCAGTTCAATTGGTAGACCCAAGCTCAAGTCTTCCATGGGAGGAACAACCTCTTCTAGGGGAGATAGACCCTTAGATGTCATAGAATCTTTGAGGAGAAGACAGTCTTTCAATTCTGATGAGGAAAACTGTTAA 3885 45.84 MEEVISGILTDLEAHSTASLSDPNPPLPISQSTLSDLQTLLDNAMATEDSHHIDRLFEDLSSRNLSISSLIRPMASAMDSSPTDISLLASRVYLSLLLSLNAPVFTLFTPMAFLSLLRSIRQCFKNRKMGPPRFGESSRGSYAAAYRKRKGGGRARGVRSRVRESLVQTVAEIPAMALELCGNTASFDKLTHLCSRVLTEVLSSEHGDQATTAAEVLKSLSPLILLAKSEARTFALGFMMNRMMGMAKEFDGVKKAIVNLPRYLLQKAPEKSEPRALAVESVMEIVKTMEFEEQIGFVMYVVKMTQGKSHFRLLAVDLFPLLIMSLRDPLGVNTGNEVKNSWGLNCLEALIQRCSDATAGIRARALTNLAQIVGFLSTDDRNQVMLKEGMGFGSSSHQKLEGGVNDLLRKRCMDEKAAVRKAALLLITKLTGLLGGEFVGDLLKTMGMACSDPLVSIRKAAISALSEAFKTFPDGNVTTEWLHSIPRLITDNESSIQEECENLFLELVLDRVSRAGSTVSAHKKLVCNDLNAKTKSLEMEIELLFPGGVLVLLKEICNGEVAPWVKKICTSLGKKKRLKPKIAVALQGMIKASESLWLSHSMPIEKWTAPPGAWFLLSEVSEFLSKAVDWEFLHHHWQLVDKNGPGVEFRSPVQDFDDGVDCSMSNSVAWAGDRVFLLKTISNVSVELPPEPAAALGHNLLTRIEEFNMHSTEVNAHVKALRTLCKRQVLNPDEADDLVQKCVHKLLSKASQILDKYISEASEANIDSDFRTPPGGARRKGRTALTMSRSLSRAITAVYTIGSLVIICPSANLDAIIPILHTIITSGSSDTKLNKLQGNTFPLKQAAPSLYIHAWVTMGKICLADGELAKRYIPLFVQELEKSDCAALRNNIVVTLADFCVRYTALVDCYVSKITKCLRDSCELVRRQTFILLSRLLQRDYVKWRGVLFLRFLLSLVDESEEIRRLADFLFGNILKAKAPLLAYNSFVEAIFVLNDCHVHNGGNDSQSTQTERDRFSIRGNDEKSRSKRMHIYVCLLKQMAPEHLLATFAKLCAEILAAASDGMLNMEDVHGQSVLQDTFRILACKEIRIPSTRGSTSDSADGEEEGLDGGAASEASAARGRAITQAVKKSLVQNTIPIFIELKRLLESKNSPLTGSLMECLRILLKDYKNEIDDMLVADKQLQKELIYDMEKYDAAKAKSTAAAAVATMQPCYRSPHVSKVASAMSDAVAAATVRSVLKEVNRGSPTPPFSSIGRPKLKSSMGGTTSSRGDRPLDVIESLRRRQSFNSDEENC* 1295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2906779 2913701 - Vvi5g291 Vvi5g291 786433

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g291 1294 MobiDBLite consensus disorder prediction 1275 1294 - -
Vvi5g291 1294 Pfam non-SMC mitotic condensation complex subunit 1 406 531 IPR032682 -
Vvi5g291 1294 Pfam non-SMC mitotic condensation complex subunit 1 888 1066 IPR032682 -
Vvi5g291 1294 PANTHER CONDENSIN-2 COMPLEX SUBUNIT D3 163 1285 - -
Vvi5g291 1294 PANTHER CONDENSIN-2 COMPLEX SUBUNIT D3 3 161 - -
Vvi5g291 1294 SUPERFAMILY ARM repeat 312 1171 IPR016024 -
Vvi5g291 1294 Gene3D - 216 515 IPR011989 -
Vvi5g291 1294 Coils Coil 1166 1186 - -
Vvi5g291 1294 MobiDBLite consensus disorder prediction 1092 1114 - -
Vvi5g291 1294 MobiDBLite consensus disorder prediction 1241 1294 - -
Vvi5g291 1294 MobiDBLite consensus disorder prediction 1003 1023 - -
Vvi5g291 1294 PANTHER CONDENSIN 3 161 IPR026971 GO:0007076
Vvi5g291 1294 PANTHER CONDENSIN 163 1285 IPR026971 GO:0007076
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g291 K11491 NCAPD3; condensin-2 complex subunit D3 - vvi:100240773 2382.06
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g291 . Blo12g00017 . . Bpe04g01135 . . . . Cmo17g00320 . . . . . . . . . . . . . . Cla06g00475 . . Cco06g0513 . Cmu06g0495 . . . Cone7ag0144 . . . Chy11g01515 . . . . . . . . . Sed12g1134 . . . Cma17g00330 . Car17g00304 . . Bhi12g02048 Tan06g2683 Cmetu04g0061 Lac11g0844 Hepe03g0098 . Lcy12g0737 . . . . . . . Lsi09g01434 . . Cme11g02016
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010431 2 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 0 1 1 1 1 2 1 2 1 1 31