Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g293 ATGGCTTCCGCTATGGTTGAAGACAGTAGCTTCGAAGACGACCAGCTCGCTTCGATGTCCACTGACGACATTGCTAGAGCTTCCCGTCTCCTTGATAATGAGATTCGAATCCTCAAGGAAGAGTTGCAGAGAACGAATCTGGAGTTGGAATCGTTCAAAGAAAAAATAAAGGAGAATCAAGAGAAGATCAAGCTCAACAAGCAGCTACCCTACCTTGTTGGGAACATCGTTGAGATTTTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGATGGCGCTAACGTTGATCTTGACTCCCAAAGAAAAGGAAAATGTGTCGTGTTGAAAACCTCTACACGCCAGACGATCTTTTTGCCTGTTGTTGGGCTTGTTGACCCTGATAAGCTGAAACCTGGTGACTTGGTTGGGGTGAATAAAGATAGCTACCTGATCTTGGACACTCTTCCGTCTGAATATGATTCTCGAGTAAAGGCTATGGAAGTCGATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGATTCCAGAAACTAGGAATTCGGCCACCCAAGGGAGTGCTTTTGTATGGGCCTCCAGGGACTGGCAAAACATTAATGGCTCGTGCTTGTGCTGCACAGACAAATGCCACTTTTCTGAAGCTAGCTGGTCCACAACTTGTCCAGATGTTCATAGGGGATGGTGCAAAACTTGTTCGAGATGCATTCCAGCTTGCAAAAGAGAAATCCCCATGTATCATTTTCATTGATGAAATTGATGCCATTGGCACGAAGCGTTTTGATAGTGAGGTGAGTGGAGATAGAGAAGTGCAGCGAACAATGTTGGAATTGCTCAATCAGCTTGATGGTTTTAGTAGTGATGACCGTATAAAGGTCATAGCAGCAACAAACAGGGCTGATATCCTGGATCCAGCTCTCATGCGTTCTGGTCGTTTAGACCGAAAAATTGAGTTCCCTCATCCTTCTGAAGATGCAAGAGCGAGAATTTTGCAGATCCATTCAAGGAAAATGAATGTACACCCAGACGTAAATTTTGAGGAACTCGCTCGTTCAACTGATGATTTCAATGGAGCACAGCTGAAAGCCGTTTGTGTGGAGGCAGGCATGTTAGCTCTCCGTCGAGATGCAACTGAGGTGATCCACGAAGACTTCAATGAAGGTATTATTCAAGTACAGGCCAAAAAGAAATCCAGTTTAAACTATTATGCATAA 1272 44.58 MASAMVEDSSFEDDQLASMSTDDIARASRLLDNEIRILKEELQRTNLELESFKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDGANVDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPSEDARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVIHEDFNEGIIQVQAKKKSSLNYYA* 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2943703 2952400 - Vvi5g293 Vvi5g293 786435

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g293 423 PANTHER - 8 421 - -
Vvi5g293 423 Pfam Proteasomal ATPase OB C-terminal domain 73 149 IPR032501 -
Vvi5g293 423 Gene3D - 31 158 IPR012340 -
Vvi5g293 423 Pfam AAA+ lid domain 362 406 IPR041569 -
Vvi5g293 423 TIGRFAM 26Sp45: 26S proteasome subunit P45 family 42 410 IPR005937 GO:0005737|GO:0030163|GO:0036402
Vvi5g293 423 Gene3D - 159 340 IPR027417 -
Vvi5g293 423 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 167 412 IPR027417 -
Vvi5g293 423 CDD AAA 173 339 - -
Vvi5g293 423 Gene3D - 345 423 - -
Vvi5g293 423 SMART AAA_5 203 342 IPR003593 -
Vvi5g293 423 Coils Coil 28 69 - -
Vvi5g293 423 Pfam ATPase family associated with various cellular activities (AAA) 207 339 IPR003959 GO:0005524|GO:0016887
Vvi5g293 423 ProSitePatterns AAA-protein family signature. 310 328 IPR003960 GO:0005524|GO:0016887
Vvi5g293 423 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 8 421 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g293 K03065 PSMC3, RPT5; 26S proteasome regulatory subunit T5 - vvi:100256329 814.298
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi5g293 Vvi14g186 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g293 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002966 1 1 2 3 2 1 1 2 2 1 2 2 1 2 2 1 2 3 2 2 2 2 2 2 2 1 2 1 0 2 51