Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g296 ATGGGTGGCCAGATGCAACAGAGCAATGCTGCGGCGACTGCTCTGTATGATCACCCCGGCGGCGGGACTCTGCACAATGCAGGTCCTGCGAGCGACGCTGGGGATGCAGTCATGGCGCGATGGCTCCAGTCCGCCGGATTGCAGCATCTGGCCTCTCCATTGGCTTCCACCGGAATTGATCATCGCCTCCTCCCCAATCTTCTCATGCAGGGTTATGGAGCACAGTCTGCTGAAGAGAAACAGAGGCTTTTCAAATTGATGAGGAACCTTAATTTTAACGGGGAATCTGGTTCTGAGCCATACACTCCTACTGCCCAAACTTCAGGAGTGGTTGCATCAGAGGGTTTTTATTCTCCTGAATTTAGGGGGGATTTTGGAGCTGGGCTTTTGGATCTTCATGCTATGGATGATACAGAACTCCTATCTGAGCACGTTATATCAGAACCCTTCGAGCCATCACCTTTCATGCCTGGTGCTACGAGAGCATTTGACAATGACTTTAATGTGATGACCAGCAGGCAGCAGAAAGGGCAAACAGAGGCAGATCCTTCAGTTGGATTTCTGGCAAATGAAAAAGAGAACACCAAGGAAAATAATGTGGCTAAGATAAAAGTTGTGGTACGCAAAAGACCTTTAAACAAGAAGGAGCTGTCTCGGAAAGAGGATGACATTGTAACTGTATCTGATAATGCCTATCTCACTGTCCATGAACCCAAGCTAAAGGTGGACTTGACTGCTTATGTGGAGAAGCATGAATTTTGTTTTGATGCCGTTCTGGATGAGCATGTTACTAATGATGAGGTATATCGGGTTACTGTAGAGCCTATCATTCCTATTATTTTTCAGCGAACAAAAGCAACTTGTTTTGCATATGGTCAGACAGGTAGTGGTAAGACGTTTACCATGCAACCTTTACCTCTCAGAGCTGCTGAAGATCTTGTTAGATTGTTGCATCAGCCAACTTATCGGAATCAGAGGTTTAAGTTGTGGCTAAGCTATTTTGAGATATATGGCGGAAAACTCTTTGATCTTCTCAGCGATAGAAAGAAACTTTGTATGAGAGAAGATGGAAGGCAGCAAGTTTGCATTGTTGGACTGCAAGAATTTGAAGTTTTGGATGTACAGATTGTGAAAGAGTATATTGAGAGGGGAAATGCAGCAAGAAGTACAGGCTCTACTGGTGCCAATGAGGAATCTTCAAGGTCACATGCTATTCTACAACTTGTTGTTAAGAAGCACAATGAAATAAAAGATTCCAAGCGTAATAATGACGGAAATGAGGCAAAGGGTGGGAAGATTGTGGGAAAGATTTCTTTTATCGATCTTGCTGGTAGTGAAAGAGGTGCCGACACAACAGACAATGATCGACAAACACGGATTGAGGGAGCTGAAATCAATAAGAGCCTTTTGGCTCTGAAGGAGTGCATTCGTGCTCTTGACAATGATCAGATCCATATTCCATTTCGTGGAAGCAAACTCACAGAGGTGCTTCGTGATTCCTTTGTTGGCAACTCAAGGACTGTCATGATCTCTTGCATTTCTCCAAATGCAGGTTCATGTGAACATACACTCAATACTTTAAGATATGCTGATCGGGTTAAAAGTTTGTCCAAGAGTGGAAATGCAAAAAAGGATCAGGGTGTGAGTTCATTGCCACCTGTTAATAAGGAATCTTCATCAGCAGCATCTTTGCCAGCTTCTGTTGATGTGGAGGATGTTTATGAGCAGCAACCAGAAGTAAAATTAGCAGATATGGGTCGACGGACTGCAGATAAAGAAAGTTCATATAACCATGCTGCTGATTTTGATAGACAGCCCTCTAGTTTCTCTTCCAATTACCCCTTCAATGCACGGGAGGAAAGTGCGGTGGCTCCTGGTCTAATAGACAGGGAGAGGGTTGAAATGAAAAATACTTTTGTTGGTTCTACAAGTCAGAAAATGTACTCTTCATCATATTCCCAAAACTCGGTTGATACAGAAGAGAAAGTGCAAAAGGTGTCACCACCTCGTAGAAAAGTTCCACGAGAAGAAAAATCAGAGAAGCTGGGAAACTGGCTGAAGAAAGAAGGTGGAAATACAGATATGCCCTTCACAAGTTCGAAGCAGCAGAATACCAGCAATTCTAATATAAACAATGTTGTATCCAGGCAATATGAACCTGAACCTCCTAATGATGGGAATATCAATGCTATACTTGAGGAAGAAGAGGCACTCATTGCAGCTCATAGAAAAGAAATTGAAGACACAATGGAGATTGTTCGTGAAGAAATGAAACTGTTAGCAGAAGTAGACCAACCAGGCAGTCTTATCGACAACTACGTTACCCAGCTGAGCTTTGTGCTCTCACGCAAAGCAGCGGGTCTGGTTAGTCTTCAAGCTCGCCTTGCCAGGTTCCAGCATCGACTAAAGGAACAGGAGATTCTTAGCCGGAAAAGGGTGCCCCGTTAA 2448 43.87 MGGQMQQSNAAATALYDHPGGGTLHNAGPASDAGDAVMARWLQSAGLQHLASPLASTGIDHRLLPNLLMQGYGAQSAEEKQRLFKLMRNLNFNGESGSEPYTPTAQTSGVVASEGFYSPEFRGDFGAGLLDLHAMDDTELLSEHVISEPFEPSPFMPGATRAFDNDFNVMTSRQQKGQTEADPSVGFLANEKENTKENNVAKIKVVVRKRPLNKKELSRKEDDIVTVSDNAYLTVHEPKLKVDLTAYVEKHEFCFDAVLDEHVTNDEVYRVTVEPIIPIIFQRTKATCFAYGQTGSGKTFTMQPLPLRAAEDLVRLLHQPTYRNQRFKLWLSYFEIYGGKLFDLLSDRKKLCMREDGRQQVCIVGLQEFEVLDVQIVKEYIERGNAARSTGSTGANEESSRSHAILQLVVKKHNEIKDSKRNNDGNEAKGGKIVGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQIHIPFRGSKLTEVLRDSFVGNSRTVMISCISPNAGSCEHTLNTLRYADRVKSLSKSGNAKKDQGVSSLPPVNKESSSAASLPASVDVEDVYEQQPEVKLADMGRRTADKESSYNHAADFDRQPSSFSSNYPFNAREESAVAPGLIDRERVEMKNTFVGSTSQKMYSSSYSQNSVDTEEKVQKVSPPRRKVPREEKSEKLGNWLKKEGGNTDMPFTSSKQQNTSNSNINNVVSRQYEPEPPNDGNINAILEEEEALIAAHRKEIEDTMEIVREEMKLLAEVDQPGSLIDNYVTQLSFVLSRKAAGLVSLQARLARFQHRLKEQEILSRKRVPR* 816
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2962422 2970890 + Vvi5g296 Vvi5g296 786438

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g296 815 MobiDBLite consensus disorder prediction 646 708 - -
Vvi5g296 815 CDD KISc_KIF2_like 202 534 - -
Vvi5g296 815 Gene3D Kinesin motor domain 183 539 IPR036961 -
Vvi5g296 815 MobiDBLite consensus disorder prediction 693 708 - -
Vvi5g296 815 MobiDBLite consensus disorder prediction 600 614 - -
Vvi5g296 815 Coils Coil 788 808 - -
Vvi5g296 815 ProSitePatterns Kinesin motor domain signature. 435 446 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vvi5g296 815 ProSiteProfiles Kinesin motor domain profile. 202 536 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi5g296 815 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 194 536 IPR027417 -
Vvi5g296 815 MobiDBLite consensus disorder prediction 540 565 - -
Vvi5g296 815 Pfam Kinesin motor domain 208 535 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi5g296 815 MobiDBLite consensus disorder prediction 538 567 - -
Vvi5g296 815 SMART kinesin_4 200 542 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi5g296 815 PANTHER KINESIN-LIKE PROTEIN 1 814 - -
Vvi5g296 815 PANTHER KINESIN-RELATED PROTEIN 6 1 814 - -
Vvi5g296 815 PRINTS Kinesin heavy chain signature 283 304 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi5g296 815 PRINTS Kinesin heavy chain signature 393 410 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi5g296 815 PRINTS Kinesin heavy chain signature 436 454 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi5g296 815 PRINTS Kinesin heavy chain signature 486 507 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi5g296 815 Coils Coil 732 763 - -
Vvi5g296 815 MobiDBLite consensus disorder prediction 663 687 - -
Vvi5g296 815 MobiDBLite consensus disorder prediction 586 614 - -
Vvi5g296 815 MobiDBLite consensus disorder prediction 646 662 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g296 K10393 KIF2_24, MCAK; kinesin family member 2/24 - vvi:100240940 1577.38
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g296 . . . Bda08g00291 . . . . Cmo08g01203 Cmo17g00316 . . . . . . . . . . . . . . Cla06g00478 Cam06g0512 Cec06g0513 Cco06g0516 Clacu06g0496 Cmu06g0498 Cre06g1269 Cone14ag0761 Cone15ag0770 . . . . Chy11g01510 . . . . . Bpe05g00836 . . . Sed02g1073 . . Cma08g01228 Cma17g00327 Car08g01104 Car17g00301 Cpe12g00278 Cpe17g00027 Bhi12g02054 Tan06g2680 Cmetu07g0697 . . . . . . . . . . . Lsi09g01431 . . Cme11g02012
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007921 1 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 2 1 36