Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g298 ATGTCTTATGTTTTGATTATTCTTTACAAGTCCCTATTTCAAGAAGAAAAAAACTATGGAGCATGCTTCATATTACGAAATTTCACGAATTCTCACTCTCCATTACCAAAACCTTCCTCTAGGGTTTCATCCTCTCCGATTCATGCTCTGATCCAAATCTCTCCTTCAATATTTGGCCTTTTTTTCCTTCCTTCTTCACACAATTTTATTTTTTTTGGGTTCAATTTGGGGTTAATTGACCTACTTTTTCTCCGCGGTGACGAATGTTTCACCTTGAATCATACGTTCTTGTCTCCGTATCCTCAAGATTTGGACCGTAGAATCGATTCTCACATTTCCAAGAAGCCTAGGCTTTCATCTATGCCACAGACCCCGGACCCTGCCGTTTCGTCGAGAAGTACTGCTTCAAGAATTCAGCGGTACCCCGAGCCGACGGCGAAGTTGCGTAGGGAAGTTCATGCCCCGTGTAGAGTGGTCAAATTCGGATTTGCAGCGAGTTCAAATCGGGATAACGTTATGGGGAATGTTCTTAGCTCTCAATATGAAAAGGCAAAAAATACTGCAATTCAAGCGTTACGGTACTTCAGGAAGGATAAGGAGGTGATTGATGTGGGAAATGAGCGAGGTGAAGATTTAGCGTCACGGGGGGCTGATGGGGCGGCTGTTCCCGATATCCAGGAATTGGAAACAAAAAATTTCGACCGGCGGCTTTGGCAGTCTTCTTCTTCTGGTGTTACGGAATTGAGTAATGTTAATTTGAAGATGTTGGATTCATTGACTCTGCGTGAGACGGATGTTGAGTTAGGAGTGCTTCCGCACAAAAAGTGGTTGGATTCTGCTGAGAAACGGAATTCCAAATTGAGAGATTTGAGTGTTCAAATTAAGTTTTTGGAGGCTCAACGATCTTCATTGCATGCATTACGCCCTGCAAAGAAACCAGAGGAGGAGGTACCTAGAGAACCTTTCCTCCCTCTTACACAGGAGGAAGAGGCCGAGGTTGATCGTGCCTTATCTTCCATAAATAGGAGGAAGGTATTGGTCACCCATGAGATCTCCAACATTGAGATTACAGGAGAAATATTGCAATGCCTTCAACCCACTGCATGGTTGAACGATGAGGTCATAAATGTGTACCTCGAGTTACTGAAAGAGAGAGAAAAGAGAGAACCGAAAAAGTTTTTGAAATGTCATTTCTTCAACACATTCTTTTATAAAAAGTTAATAAGTGGGAGGAATTCCTATGACTATAAATCTGTTAGAAGATGGACTACGCAAAGGAAGTTGGGATACAGCCTTAGTGAATGTGACAAAATATTTGTCCCCATCCATCAAGAGATACATTGGTGCTTAGCGGTTATCAATAAACAGGATAAGAAGTTCCAGTATCTTGATTCACTCAAAGGAATGGATACCCGAGTGCTGAAAGTATTGGCTAGATACTATGTGGATGAAGTGAAGGACAAGAGTGAGAAGGACATTGACCTGAGTTCTTGGGAGCAAGAATACGTAGAAGACCTTCCTGAACAGAAGAATGGGTACGACTGTGGCATGTTCATGATCAAATATGCTGATTTCTATAGCAGAGGCATAGAGCTCTGTTTCAACCAGGAACACATGCCCTATTTTCGGTTGAGGACTGCTAAGGAGATTTTAAAATTGAAAGCCGACTAA 1671 42.19 MSYVLIILYKSLFQEEKNYGACFILRNFTNSHSPLPKPSSRVSSSPIHALIQISPSIFGLFFLPSSHNFIFFGFNLGLIDLLFLRGDECFTLNHTFLSPYPQDLDRRIDSHISKKPRLSSMPQTPDPAVSSRSTASRIQRYPEPTAKLRREVHAPCRVVKFGFAASSNRDNVMGNVLSSQYEKAKNTAIQALRYFRKDKEVIDVGNERGEDLASRGADGAAVPDIQELETKNFDRRLWQSSSSGVTELSNVNLKMLDSLTLRETDVELGVLPHKKWLDSAEKRNSKLRDLSVQIKFLEAQRSSLHALRPAKKPEEEVPREPFLPLTQEEEAEVDRALSSINRRKVLVTHEISNIEITGEILQCLQPTAWLNDEVINVYLELLKEREKREPKKFLKCHFFNTFFYKKLISGRNSYDYKSVRRWTTQRKLGYSLSECDKIFVPIHQEIHWCLAVINKQDKKFQYLDSLKGMDTRVLKVLARYYVDEVKDKSEKDIDLSSWEQEYVEDLPEQKNGYDCGMFMIKYADFYSRGIELCFNQEHMPYFRLRTAKEILKLKAD* 557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2972086 2979785 - Vvi5g298 Vvi5g298 786440

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g298 556 PANTHER UBIQUITIN-LIKE-SPECIFIC PROTEASE 1A 107 210 - -
Vvi5g298 556 PANTHER UBIQUITIN-LIKE-SPECIFIC PROTEASE 1A 250 555 - -
Vvi5g298 556 Coils Coil 280 300 - -
Vvi5g298 556 SUPERFAMILY Cysteine proteinases 321 554 IPR038765 -
Vvi5g298 556 MobiDBLite consensus disorder prediction 113 137 - -
Vvi5g298 556 Gene3D Adenoviral Proteinase; Chain A 312 554 - -
Vvi5g298 556 MobiDBLite consensus disorder prediction 116 137 - -
Vvi5g298 556 PANTHER SENTRIN/SUMO-SPECIFIC PROTEASE 250 555 - -
Vvi5g298 556 PANTHER SENTRIN/SUMO-SPECIFIC PROTEASE 107 210 - -
Vvi5g298 556 Pfam Ulp1 protease family, C-terminal catalytic domain 369 550 IPR003653 GO:0006508|GO:0008234
Vvi5g298 556 ProSiteProfiles Ubiquitin-like protease family profile. 354 526 IPR003653 GO:0006508|GO:0008234
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g298 K08592 SENP1; sentrin-specific protease 1 [EC:3.4.22.68] - vvi:100247642 912.909
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g298 . . . Bda08g00290 . . . Bma05g01035 Cmo08g01202 Cmo17g00315 . . . . . . . . . . . . . . . . . . . . . Cone14ag0762 Cone15ag0771 . . . . Chy11g01509 . . . . . Bpe05g00837 . . . Sed09g0246 . . Cma08g01227 Cma17g00326 Car08g01103 Car17g00300 Cpe12g00277 . Bhi12g02057 Tan06g2678 Cmetu11g0237 . Hepe03g0102 . . . . . . . . . Lsi09g01430 . . Cme11g02011
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006082 1 3 1 1 1 1 3 1 1 1 0 1 1 1 1 2 1 2 2 1 1 2 1 1 2 1 1 2 1 1 39