Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g3 ATGAAAATTAATCTCTTCTGTGAAAAAGAAAAGGTCATAGTCATTTCTATGCTTAATTGGTTCAAGGTGTCATACCCGATAGTTTCGGATCCGAAGTCGGATATTATCCTGCTACTCAACATGGTGGATCCTGCAATAGACTCCTACGGAAACAATCTCCCCTCTCGAGTTCTCTACATCATTGGCCCTGACAAGAAGATTAAGCTGGGCTTTCTTTACCCGGGGTCCACTGGCCGCAACGTGGATGAAGTGATGAGGGTGCTGGACGCACTGCAGAAGGCGGCCAAGCACAGGATCGCCACTCCCGTCAACTGGAAACCAGGTGAGCTGGTGGTCATTCAGCCAGGTGTCTCCGACGACGAAGCCAAACAGTTGTTCCCTCAGGGTTTCCAGACTGTTGCTCTTCCATCCAACAATTTTCCTTCTGACAGTTCTGGGCTGCCTGCATTATTGCCTTGCCTATGGATTGACTATCCCTGGATCTTCCAAGTCCTCTTTGCATGA 504 48.81 MKINLFCEKEKVIVISMLNWFKVSYPIVSDPKSDIILLLNMVDPAIDSYGNNLPSRVLYIIGPDKKIKLGFLYPGSTGRNVDEVMRVLDALQKAAKHRIATPVNWKPGELVVIQPGVSDDEAKQLFPQGFQTVALPSNNFPSDSSGLPALLPCLWIDYPWIFQVLFA* 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19030 27806 - Vvi5g3 Vvi5g3 786145

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g3 167 PANTHER MCG48959-RELATED 21 138 - -
Vvi5g3 167 Pfam C-terminal domain of 1-Cys peroxiredoxin 90 129 IPR019479 GO:0051920
Vvi5g3 167 Gene3D Antioxidant, Horf6; Chain A, domain2 80 140 - -
Vvi5g3 167 SUPERFAMILY Thioredoxin-like 19 137 IPR036249 -
Vvi5g3 167 PANTHER MCG48959-RELATED 21 138 - -
Vvi5g3 167 Gene3D Glutaredoxin 8 79 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g3 K11188 PRDX6; peroxiredoxin 6 [EC:1.11.1.7 1.11.1.27 3.1.1.-] - vvi:100244727 236.498
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g3 . . Bda03g01197 . Bpe04g01126 . . . . . Cma06g01582 . . . Sed02g0487 Cpe08g00136 . Bhi01g01119 Tan10g1105 Cmetu06g2035 . . . . . . . . . . . Cone14ag0686 . . . Lsi05g01396 . . Cme06g00822 . . . . . . . . . Cmo06g01578 . . . . . . . . . . . . . . Cla05g00729 Cam05g0798 Cec05g0805 Cco05g0807 Clacu05g0787 Cmu05g0750 Cre05g0826 . Csa03g01545 Chy06g00781 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0031808 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2