Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g30 ATGGTGGTGGCCTCTCCAACCCCAATTGGAAGTGAGAAGCTCATAGCTGTGGAGGTTCCAATAATAGACCTCGCAGCTAGGGGACCGAAGGTAGCAGAGCTGATAGTGAAAGCTAGTCAAGAGTTTGGTTTCTTCAAGGTGATCAACCATGGAGTTCCTGAGGATGTGATCAGGAAGATGGAAGAAGAGAGTTTTAACTTCTTTGGGAAACCAGACTCAGAGAAGAAGAAAGCTGGGCCAGCACAGCCATTTGGCTATGGCTGCAAGAACATAGGGTTTAATGGTGATATGGGTGAGGTTGAATACCTTCTGTTCAACACCAACCCTCACTGCATTTCTCAGAGATCAGAAACTATCTCCAATGACCCAACAAAGTTCAGCTCTGCTGTGAGTGGTTACATACAAGCAGTTACAGATCTGGCATGTGAAATTTTGGATCTGATGGCAGAGGGATTGTGGGTCCAGAACACTTCAGTCTTCAGCAGCCTCATCACACATCTTGACAGTGACTCAGTCTTCAGGCTCAATCACTATCCTCCTCCTCTTAAGGACAGGGACACTTCACCTTCTTCCTCATTTCAGATTCATCATCAGGGCAACAACATTGGATTTGGAGAGCATTCTGATCCTCAGATCCTGACCATCTTGAGATCCAACGATGTGGGTGGCCTCCAAATTTGTCTGGGAGACGGGGTTTGGGTCCCAGTCCCCCCTGACCCCACCAGCTTCTGTGTTAACGTGGGGGACTTGTTGCAGGCCATGACAAATGGGAGGTTTGTGAGCGTGAGACACAGAGCCTTGACCAATTCAGACAAGCCCAGAATGTCAATGGCCTTTTTTGGAGCTCCACCTCTTCATGCATTGATCACTTCTCCCCCAGAGGTGGTCACACCTGAGAGGCCTTCTCTTTACAGGCCATTCACTTGGGCTGAATACAAGGAAATTACATACTCTCTACGGCTCGGGGACAGTCGTCTGAACCTTTTCAAAGCCTGCCCAGACAAGGAAGCTCAAGAGTGA 1020 48.53 MVVASPTPIGSEKLIAVEVPIIDLAARGPKVAELIVKASQEFGFFKVINHGVPEDVIRKMEEESFNFFGKPDSEKKKAGPAQPFGYGCKNIGFNGDMGEVEYLLFNTNPHCISQRSETISNDPTKFSSAVSGYIQAVTDLACEILDLMAEGLWVQNTSVFSSLITHLDSDSVFRLNHYPPPLKDRDTSPSSSFQIHHQGNNIGFGEHSDPQILTILRSNDVGGLQICLGDGVWVPVPPDPTSFCVNVGDLLQAMTNGRFVSVRHRALTNSDKPRMSMAFFGAPPLHALITSPPEVVTPERPSLYRPFTWAEYKEITYSLRLGDSRLNLFKACPDKEAQE* 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 343989 346779 - Vvi5g30 Vvi5g30 786172

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g30 339 Pfam non-haem dioxygenase in morphine synthesis N-terminal 19 84 IPR026992 -
Vvi5g30 339 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 3 332 - -
Vvi5g30 339 Gene3D - 5 319 IPR027443 -
Vvi5g30 339 Pfam 2OG-Fe(II) oxygenase superfamily 170 281 IPR044861 -
Vvi5g30 339 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 168 283 IPR005123 -
Vvi5g30 339 PRINTS Isopenicillin N synthase signature 243 269 - -
Vvi5g30 339 PRINTS Isopenicillin N synthase signature 35 52 - -
Vvi5g30 339 PRINTS Isopenicillin N synthase signature 207 228 - -
Vvi5g30 339 PANTHER GIBBERELLIN 2-BETA-DIOXYGENASE 6 3 332 - -
Vvi5g30 339 SUPERFAMILY Clavaminate synthase-like 16 323 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g30 K04125 GA2ox; gibberellin 2beta-dioxygenase [EC:1.14.11.13] - vvi:100258599 687.182
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi5g30 Vvi7g433 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g30 Blo01g00042 . . Bda08g00321 . . . Bma05g01009 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe05g00807 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001435 2 2 2 2 3 2 3 2 2 2 2 2 3 2 2 3 2 6 3 2 2 2 2 3 4 2 2 2 2 2 72