Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g302 ATGAGTCTTTCTGGGTTTGGCCCATCTAGTAACATATCTATTGAGCTGGTTGCAAACTGTGTCAAGTCTCGGAAGTTGCGAGAGGCTTTTGATATTATACAAACCATGCGAAAGTTCAAGTTCCGCCCAGCATTTTCAGCGTATACAATTTTAATTGGGAAGGTCGGGTTGATGCTGCTCTTTCCCTGGGTTCTCTGCAAAGCTAATAGACTGGATGAAGCTGTGGAGCTATTTGAACAGTTGGAACAGAATAGGAAAGTTCCATGTGCTTATGCTTACAACACCATGATCATGGGTTATGGATCAGCTGGAAAATTTGATGAAGCTTATGGTTTACTTGAGAGGCAAAAGGCAAAGGGAAGCATTCCCAGTGTTATTGCATACAACTGCATTCTTACTTGTCTTGGGAAGAAAAGGAGAGTTGAGGAGGCTTTAAGAATCTTTGAGGAGATGAAGAGAGATGCAGTTCCCAATGTTCCAACTTATAATATTCTCATAGACATGCTTTGCAGGGAAGGGAAACTCAACGCTGCTTTGGAAATTCGGGATGACATGGAAAGAGCTGGCCTGTTTCCTAATGTTTTGACTGTGAACATAATGATTGATAGGCTATGTAAAGCTCAAAAACTTGAGGAAGCTTGTTCTATATTTGAAGGGATGGATGATAAAGTTTGCACCCCAAATGCAGTTACATTTTCGTCTCTCATAGATGGTTTGGGTAAATGTGGTAGAGTGGATGATGCCTACAGCCTATATGAAAAGATGCTGGATTGTGGTCATGTTCCTGGTGCTATTGTCTATACATCCCTCATTAGAAGCTTCTTCAAGTGCGGTAGGAAGGAAGATGGTCACAAGATCTACAAGGAGATGGTCCATACAGGCTGTTCTCCTGATCTAACCCTTATTAATACCTACATGGATTGTGTTTTCAAAGCTGGTGAAACTGAGAAAGGCAGGGCTTTGTTTCGGGAGATTAATGCCCATGGCTTCATTCCAGACGCTCGGAGCTATTCTATCCTTATCCATGGTCTTGTAAAAGCAGGTTTGGCAAATGAGACCTATGAACTGTTCTATGCAATGAAGGAGCAAGGCTGTGTTCTGGACACCCATGCTTACAATGCTGTGATTGATGGATTCTGCAAGTCAGGTAAGGTGAACAAAGCTTACCAGCTACTGGAGGAAATGAAGGTGAAGGGTCACCCACCCACTGTGGTTACCTATGGTTCTGTCATTGATGGGCTTGCCAAGATTGACAGACTTGATGAAGCATACATGCTCTTTGAAGAAGCAAAATCAAATGGAATAAAATTAAATGTAGTTGTGTATAGTAGTCTTATTGATGGGTTCGGGAAGGTGGGTAGAATTGATGAAGCATATCTAATCATGGAAGAGTTGATGCAGAAAGGTTTGACACCTAATGTATATACATGGAATTGCTTGCTTGACGCACTGGTAAAAGCCGAAGAAATTAATGAAGCCCTCATCTGCTTTCAGTCTATGAAAGACTTGAAATGCCCTCCCAACCAGATAACATACAGCATTCTCATAAATGGTCTCTGTAGGGTTCGAAAATTCAACAAGGCCTTTGTGTTTTGGCAAGAGATGCAGAAGCTGGGATTAAAACCCAATACAATCACCTACACCACCATGATCTCAGGACTTGCAAAGGCTGGAAACATATTAGAGGCCAGTGGGCTCTTCAGTAGGTTCAAGGCAAATGGGGGCATACCTGACTCAGCTAGTTATAATGCTATGATAGAAGGATTGAGCAGTGCAAACAAGGCCATGGATGCATATGCACTTTTTGAGGAAACTCGTTTGAAAGGTTGCAATATACATACCAAAACCTGTGTCGTTCTTTTAGACGCACTGCATAAGGCTGAATGCCTTGAACAGGCTGCAATTGTGGGTGCTGTATTAAAGGAAACAGCCAAGTCTCAACATGCTTCAAGATCCTTCTAA 1962 42.15 MSLSGFGPSSNISIELVANCVKSRKLREAFDIIQTMRKFKFRPAFSAYTILIGKVGLMLLFPWVLCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMKRDAVPNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPDSASYNAMIEGLSSANKAMDAYALFEETRLKGCNIHTKTCVVLLDALHKAECLEQAAIVGAVLKETAKSQHASRSF* 654
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3001168 3003605 + Vvi5g302 Vvi5g302 786444

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g302 653 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 124 154 IPR002885 -
Vvi5g302 653 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 438 472 IPR002885 -
Vvi5g302 653 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 367 IPR002885 -
Vvi5g302 653 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 473 507 IPR002885 -
Vvi5g302 653 PANTHER OS07G0249100 PROTEIN 1 55 - -
Vvi5g302 653 PANTHER OS07G0249100 PROTEIN 63 644 - -
Vvi5g302 653 Gene3D Tetratricopeptide repeat domain 260 326 IPR011990 GO:0005515
Vvi5g302 653 Gene3D Tetratricopeptide repeat domain 397 464 IPR011990 GO:0005515
Vvi5g302 653 Gene3D Tetratricopeptide repeat domain 327 396 IPR011990 GO:0005515
Vvi5g302 653 Gene3D Tetratricopeptide repeat domain 569 644 IPR011990 GO:0005515
Vvi5g302 653 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 578 612 IPR002885 -
Vvi5g302 653 TIGRFAM PPR: pentatricopeptide repeat domain 475 508 IPR002885 -
Vvi5g302 653 TIGRFAM PPR: pentatricopeptide repeat domain 336 369 IPR002885 -
Vvi5g302 653 TIGRFAM PPR: pentatricopeptide repeat domain 371 403 IPR002885 -
Vvi5g302 653 TIGRFAM PPR: pentatricopeptide repeat domain 510 544 IPR002885 -
Vvi5g302 653 TIGRFAM PPR: pentatricopeptide repeat domain 440 474 IPR002885 -
Vvi5g302 653 TIGRFAM PPR: pentatricopeptide repeat domain 196 229 IPR002885 -
Vvi5g302 653 TIGRFAM PPR: pentatricopeptide repeat domain 265 298 IPR002885 -
Vvi5g302 653 TIGRFAM PPR: pentatricopeptide repeat domain 127 153 IPR002885 -
Vvi5g302 653 TIGRFAM PPR: pentatricopeptide repeat domain 161 194 IPR002885 -
Vvi5g302 653 TIGRFAM PPR: pentatricopeptide repeat domain 303 334 IPR002885 -
Vvi5g302 653 TIGRFAM PPR: pentatricopeptide repeat domain 91 124 IPR002885 -
Vvi5g302 653 TIGRFAM PPR: pentatricopeptide repeat domain 230 263 IPR002885 -
Vvi5g302 653 TIGRFAM PPR: pentatricopeptide repeat domain 405 439 IPR002885 -
Vvi5g302 653 TIGRFAM PPR: pentatricopeptide repeat domain 581 610 IPR002885 -
Vvi5g302 653 TIGRFAM PPR: pentatricopeptide repeat domain 545 578 IPR002885 -
Vvi5g302 653 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 263 297 IPR002885 -
Vvi5g302 653 SUPERFAMILY HCP-like 64 541 - -
Vvi5g302 653 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 368 402 IPR002885 -
Vvi5g302 653 Gene3D Tetratricopeptide repeat domain 150 259 IPR011990 GO:0005515
Vvi5g302 653 Gene3D Tetratricopeptide repeat domain 1 149 IPR011990 GO:0005515
Vvi5g302 653 Gene3D Tetratricopeptide repeat domain 465 560 IPR011990 GO:0005515
Vvi5g302 653 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 228 262 IPR002885 -
Vvi5g302 653 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 89 123 IPR002885 -
Vvi5g302 653 Pfam PPR repeat 433 464 IPR002885 -
Vvi5g302 653 Pfam PPR repeat 539 568 IPR002885 -
Vvi5g302 653 Pfam PPR repeat 225 255 IPR002885 -
Vvi5g302 653 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 403 437 IPR002885 -
Vvi5g302 653 Pfam PPR repeat 336 365 IPR002885 -
Vvi5g302 653 Pfam PPR repeat 581 610 IPR002885 -
Vvi5g302 653 Pfam PPR repeat 65 84 IPR002885 -
Vvi5g302 653 Pfam PPR repeat 127 154 IPR002885 -
Vvi5g302 653 Pfam PPR repeat 92 115 IPR002885 -
Vvi5g302 653 Pfam PPR repeat 266 295 IPR002885 -
Vvi5g302 653 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 508 542 IPR002885 -
Vvi5g302 653 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 543 577 IPR002885 -
Vvi5g302 653 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 193 227 IPR002885 -
Vvi5g302 653 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 298 332 IPR002885 -
Vvi5g302 653 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 158 192 IPR002885 -
Vvi5g302 653 Pfam PPR repeat family 368 416 IPR002885 -
Vvi5g302 653 Pfam PPR repeat family 472 521 IPR002885 -
Vvi5g302 653 Pfam PPR repeat family 157 206 IPR002885 -
Vvi5g302 653 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 1 55 - -
Vvi5g302 653 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 63 644 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g302 - - - vvi:100249392 1190.64
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g302 . . . . . . . . . . . . . . . . . Bhi01g01018 Tan10g1011 . . Hepe05g1445 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008580 1 4 1 0 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 1 1 1 1 1 2 3 1 33