Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g304 ATGATTAAAAATTATAAATTTCCCAACCCACCTATCAAAACCATTGCCCTGAAGGGTGCACGTTCGCGGGAATCAAAAGCTGCCACTGCCCTCGCAATGGTCTTCTCCTTCCTCACTCCTGTAACCACCACCGTCGGCGCCGCCACAGCCATCATTCAAAGGAAAGCAATAATCTTATCTTCTACTTCCAAGTCATTTCCGTTAAAACCCAGAAAGAGAAAGAACTATTTACGCCCTAAATTGTTAGAAACCCTAACAATACCCTACCCCAACACGACTCTTCTCCCCCAAGAATCTCCACTTCCCATTGAATCCCATGAAATCCTTCAGGAGATTTCCTTCGATCAAACTTCCGGAGAATCTTTCACTATCGTCGTCGGAGACGACGATAAAACTGCGCATCAGAATGAGGCTGAATCGCGTCAATTTCTTCTCTCCCCGACCTCCGGCCCTGCCAAGGTCGAGAATGGAGAAGTTGGCAAATTTTCTACAGGTTCACTCCTAAAATTAGGCTTGTGCTTGGTTGGGATTTTCGTGTTTCAGACAATTTGTGCTGTTTGGGTGTTAGGATCTGCGGATTCTGATCAGGAACATGAAATTTCGGATAGTGAAGCTAAGGGTTCGCAATTGGGTGCCAATGAAAGAAATAAAGGAAAATTTTTGTTGAATTTCGGTGGCAAATTTTTTGGTGAAAAGATTGGTAATAAATCGAGCCATGCTGTTTATCTGAATGAGTCTGAATTGGAAGAGAAAATAGTGGAAATTAGGGCAATGGCAAAGGAAGCCCGTGAGAGTGAGGGAAAGAAGCTGAAAAACAATGGCATGAATTCATATTTGGAAGAAGCTGGGGGAGGTGATGCTGATGAAGATGTCATTTCTAGTATAAGAAGTGGAATCCAAGAAGAGGTTGATACACGGTTGCTTAAGTTGCAGAAGAGGTTGAATGCTACACGGGAGAAGTCGCCATTACCGTTAGTTAGTCATTTGAACAAGTTTGGCAAGGTTGAAAACAGGGTGAATGGGGATCATTCGGATGTAGCTGAGTTAAATAGAACATTGATGTTTAAGAAAAAGATGAAATTTCGAAATGCTTCCTCTATGCCAAGAAATGATCCAAAGGGGTTTCAGCCTTTGGAAAATAGTGATATATCCAAGAAGAAAAAAAGTAGTTCATCCACTGTAGATACGATAGTGGACCTGCCTGCTGGCAATTCACAACAAAATGATTCCTCGTCTTTGGAGGAAGATTGTGGAAGAAATGCACTTAGTAAAGAATCAAGCTCATTGCAAAATCATGGGAAGAAGTTGGAGAAAGGAAGAGAGGGAAAGAAAATGGGAGGCATTGTGAATCCTGAGTTTGGGAATGTGAAAAGGCGATCAAGTGAAAGGGAAACAAAAAATTCTCAAAGCTTGACAAAAGAAAACCAGAACACTGTCACAAAACCCAATGCCGACTTGAGTAGAAATGGCAGTTCAAATTGCAGAAAAGTTGGAAGCAAACAAGTGGCTAAAGGATCCAGGGATAAGTCATCAGACATTAAGGCGGATTTGTGGTGGCTGCATCTTCCTTGTGTAATAGCTGTTCTTATGCAGAGAGGTTCTAACCATGAAGAACAAGGCGGACTATACACCTTAAAGACCACTTCTCATGAATCAGACCCAATTGATTCATCCTACACTGTTGCTTTTGAGGACCGTGGTGATGCCACTAATTTCTGTTATCTACTGGAATCTTTTTTTGAAGAACTAGGCGATTTCAGTGCTGACATTGTTCCTTTGTCAATAAAAGAACTTCATGAGGCAGTGAAATCAGATGGCATGAAAGTAATTGTTGTGAAGAAGGGGCAGCTTCAGCTTTATGCTGGGCAACCACTCGCTGATGTTGAGATGGCTATGCGCTCTTTGGTTGAATAA 1914 42.01 MIKNYKFPNPPIKTIALKGARSRESKAATALAMVFSFLTPVTTTVGAATAIIQRKAIILSSTSKSFPLKPRKRKNYLRPKLLETLTIPYPNTTLLPQESPLPIESHEILQEISFDQTSGESFTIVVGDDDKTAHQNEAESRQFLLSPTSGPAKVENGEVGKFSTGSLLKLGLCLVGIFVFQTICAVWVLGSADSDQEHEISDSEAKGSQLGANERNKGKFLLNFGGKFFGEKIGNKSSHAVYLNESELEEKIVEIRAMAKEARESEGKKLKNNGMNSYLEEAGGGDADEDVISSIRSGIQEEVDTRLLKLQKRLNATREKSPLPLVSHLNKFGKVENRVNGDHSDVAELNRTLMFKKKMKFRNASSMPRNDPKGFQPLENSDISKKKKSSSSTVDTIVDLPAGNSQQNDSSSLEEDCGRNALSKESSSLQNHGKKLEKGREGKKMGGIVNPEFGNVKRRSSERETKNSQSLTKENQNTVTKPNADLSRNGSSNCRKVGSKQVAKGSRDKSSDIKADLWWLHLPCVIAVLMQRGSNHEEQGGLYTLKTTSHESDPIDSSYTVAFEDRGDATNFCYLLESFFEELGDFSADIVPLSIKELHEAVKSDGMKVIVVKKGQLQLYAGQPLADVEMAMRSLVE* 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3006671 3013146 - Vvi5g304 Vvi5g304 786446

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g304 637 MobiDBLite consensus disorder prediction 430 445 - -
Vvi5g304 637 PANTHER EMBRYO DEFECTIVE 1703-RELATED 35 637 - -
Vvi5g304 637 Coils Coil 245 265 - -
Vvi5g304 637 PANTHER ABC SUBFAMILY C PROTEIN 35 637 - -
Vvi5g304 637 MobiDBLite consensus disorder prediction 390 429 - -
Vvi5g304 637 Coils Coil 300 320 - -
Vvi5g304 637 MobiDBLite consensus disorder prediction 361 507 - -
Vvi5g304 637 MobiDBLite consensus disorder prediction 470 499 - -
Vvi5g304 637 Pfam Protein of unknown function (DUF3110) 536 617 IPR021503 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g304 - - - vvi:100244229 1144.8
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g304 . Blo12g00018 . . Bpe04g01134 . . . . Cmo17g00313 . . . . . . . . . . . . . . Cla06g00479 Cam06g0514 Cec06g0515 Cco06g0518 Clacu06g0498 Cmu06g0500 Cre06g1271 . . . . . . Chy11g01508 . . . . . . . . . Sed04g1796 . . . . . Car17g00298 Cpe12g00276 . Bhi12g02060 Tan06g2675 Cmetu11g2440 Lac11g0838 Hepe03g0103 . Lcy12g0730 . . . . . . . Lsi09g01429 . . Cme11g02010
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010430 1 1 1 1 1 1 1 1 1 1 0 1 0 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 4 1 31