Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g305 ATGGAGTCCAGGCCCCGTGTCTCTCTTTCTGCAGCACAAGTCACTTCGTCAACCTCAGCGGGGTACCCACATGACCAACCATCAGAATTCATGGTCTCTCAACAGACCTTACCAGGTTTTCTCCCTATCAGAGCTCCTCTTTCTCTTGATTCTGACTTTGATATATATGTAAGAAGTGATGATAATGTAATCAGTACTAGTGGTAGTGAAAGTGGGCGCAATATGAGTGAGGAGGATGAGTTCGAATTTGAAACGGCGTCGGAGAGGCCCTTTGTAGGATTCCCAGACGAGGAAACATCTGTAGGGAGTGATGATGTTGAGGAATATGTTCTTGCTAGCCCGTTTCTTGCAGTCCCAGATGAAGAAACCCTAGAAGCACCATTACAGGATGAGCAAAATGATGCTATTGGTCATTATGCCCTTACTTTTGTCCCGGTTGTTGTGGATGATTCAAATTCAAAGTACAGCATGCCCACTGCTCGTTTGTCAATGGATGATGATTGTGATAATGGGAGTGGTGAAGAGGAGCTAAGTGAAGTAGAAGATGGTGGGTTTTCAGGTGCGGATAGGATTACTGGTATTCGGGTTTTGGAGGAGATTGACAATGTTCCTAAATTCAAGGTATTGGGTATCGAAGAAGATGATTTACAGCCCCGAATAAAGGTCAATCCGGATGTTTTCATTGGAGTTGGAAATGAAGTTCTGGGTTCTGAAAAAGCAAAGTCTTTAGTGGAGCAGTCGGTTGATGACTTGGTTGAACAAAGAGATTTTGACAATACCGAGGAGGCTATTAGTGAAGCTTCAGCAGTGAATAGAGAAGATATTGCGGAGGAGACTTTGAAATTGAATGAGAATGTAAAATGTCCCTCCACTGAAAGTCAAGTACTTAGAAAACTAGACAACCAAGAAACTGGATTGAAAGGTAGAGATGTAGGCGAGCAGAGTAGTTCAGAATTCAATAATAACGATGCTGTATATGTGAAGCTTGTGGGTTCCCGTGTAGATGTTAAAGAGCCTACCGAAGTGGTTGAAGAAAGTCTGATAATGGTTGACAGTGCTGATGTAGTAGAAGAATATGGTGACTTTAAGTCAGATGAATCCATGGGGAATTCCACTGGGAAAAATGAAATTGAGTCTGTGAACCGATCTAAAATTTCAATACTAAATCCAACTCATGAGACTAAATATTTGGGGAATGGTGATTTGCCTGGAGCTACTGAGGATGTAATGTTGGAAGACCAAATATATGGTAAATCCAGCAACTCAGTATCCAGGATACCGAGTTCCTATCTAGACCCTGACTTTGAAGTGAATGATGTAGCAAACAATGTTTCAGAGGATGTAGAAGGAGAAGGTACAATTTCTGATGGAGATGCTGGAGGTTTGGTATTTAGAAGCTCTGATACAGCCAAGCAGATCGTTAATGAAGAGAAGCAAAGCCTAGCCCCCACTTCTGGTTCAGGTGCCCAGATTCCCCAGCATCATTTGCAGACAACCGAGGGACAGACACTCAAAGACTCAGAGGAAAAATTGGAGGAAGATGGGGATGATGAAGATCATAAAATATTTGATTCTGAGGTACTGACATCACTTCTGAAAGCAGCAACTAGTGCTGGATTGGATGGCGATAGTGGCAATGGCGTATTCACCTCTGTTGATGATTCTAGAGTTTTCTCTCTCAAGCGTCATGCTGGGCTAGGCTCCTCACTGAGACCTGTTCCCCAATCAAATGGTCTCAATATTTCTGCATCTTCTGACCTTATGGCTGGGGCTGAATCTAAGGACAGCATAAGTGAAGAGGAAAAGAAAAAGCTAGAGAAGATACAACTCCTGAGAGTAAGATTCTTGAGGCTTGTCCAGAGACTAGGCCATTCTCCTGAAGATTCTATAGTTTCACAGGTTTTATACCAGCTGGCCATTGATGCAGGGAAGCACTCTAATGAAGCATTTAGCCTTGAATCTGCAAAGGGAATGGCCATGAAACTTGAAGCAGAGGGTAAAGGTGATATAGAATTCTCTTTGAATATCCTGGTTCTTGGGAAAACTGGAGTGGGAAAGAGTGCAACCATAAATTCCATTTTCTGTGAAGAGAAAGCCATGACCAATGCATTTGAACCCACCACCTCTGCTGTAAATGAAATTATTGGAACAATAGATGGAGTTAAGATCCGGGTCTTGGACACACCAGGTCTCAGATCTTCTCTGATGGAGCAGGCTTTCAACCGGAAAATATTGTCATCTATAAAGAAGTTCATGAAGAAGTTTCCTCCTGATGTTGTCCTGTATGTTGATAGGTTAGATACCGAGGACAAAGATCTTAATGATCTGCCATTGTTAAAGTCAATAACCAGTTCTCTCGGTTCGTCAATATGGCGAAATGCCATTGTCACTCTGACCCATGGTGCTTCTTCTCCCCCTGACAAACCATCTGGGTCACCCCTAAGCTATGACTTGTTTGTTTCGCAACGATCCCATTCTGTTCAGCAGTCTATCAGACAAACAGTTGGTGATCTACGTCTGATGAATCCAAACTTGATAAATCCAGTATCTCTTGTTGAGAACCATCCATTGTGTAGAAAGAACGGAAATGGTCAGAAGAAAGTTATTTGGCTTTCCGCTCCGTTCCCCACCCTACCCTACTTGTTGTCCTCCCTATTGCAGTCTTTTACTCATCCAAAACTCTCAACTGATCAAGGTGGTGAGAATGTTGACTCTGATATTGAGTTGGGGAATATGACAGACACTGATGAAGAAAATGACGATGTGTATGACCAGCTCCCAGCATTCAAGCCTCTGAGGAGATCTGATATTGCTAAGCTCAGCAAGGAGCAAAGAAAAGCTTATTTTGAGGAGTATGATTATCGGGTGAAGCTCCTTCGGAAGAAAGAGTGGAGACAGGAGTTGAAAAGGTTGAGGGAAATGAAGAAAAAGTGCAAAGATGGTGGGAATGATAATGTTCATGTGGGGGAGGATGGAGACCAGGAATCTGGAAGTCCAGCGACTGTACCAGTTCCCTTACCTGACATGGTCCTCCCACCTTCCTTTGATGCAGATAATCCTGCTTACAGGTACCGATCTTTAGATGCCATGTCCCGGCATCTTGCAAGGCCAGTTTTGATTACCCGTTGCTGGGACCATGATTGTGGATATGATGGTGTCAGCCTTGAAGAGAACCTTGCTATTGCTGGTATGTTTCCCACAGAAATCTCTGTTCAAGTCACCAAGGGAAAAAATGAGTTCAATATCCACTTTGATTCCTCTGTTTCTGCAAAGCATGGGGAAAATGGATCAACCATGGCAGGTTTCAACATTCAAACCATTGGAAGGCAGGTTGCCTACATCCTAAGGGGTGAAACCAAAATAAAAAATTTCCAAACGAACAAAACTGCTGCAGGGGTATCCATTACATTCTCAGGCAAAAATGTGGCAGCTGGACTCAAAATTGAGGATCAGATTGCAGTTGGAAGACGTCTGGTTTTTGTGGGAAGTACTGGAGCCATTCTATCTCAGAATGATGCAGCATATGGAGCCAACTTTGAAATCCGTCTCAAAGAAAATGATTTTCCTATTGGGCAGGACCAGGCCACCTTGGGTCTGTCTCTGATGAAGTGGAGAAATGACTTTGCACTAATGGGTAATCTACAATGCCATTTCTCCGTGGGACAAAGTTCTAAAATGGCTTTCCATGTCGGATTGAACAACAAACTAAGTGGACAGATCACCGTAAGGACTAGCAGCTTGGAGCAACTCCAGATTGCACTCATGGGTTTTCTTCCAATTGCCATCACCATCTTTAGGAGTCTCTGTCCGGGATCAGTTTTGTTCCATTGCACAGATGTTGTAATTCACTTAAGCAGGTCAGATAGTAAGCTGTAG 3876 43.24 MESRPRVSLSAAQVTSSTSAGYPHDQPSEFMVSQQTLPGFLPIRAPLSLDSDFDIYVRSDDNVISTSGSESGRNMSEEDEFEFETASERPFVGFPDEETSVGSDDVEEYVLASPFLAVPDEETLEAPLQDEQNDAIGHYALTFVPVVVDDSNSKYSMPTARLSMDDDCDNGSGEEELSEVEDGGFSGADRITGIRVLEEIDNVPKFKVLGIEEDDLQPRIKVNPDVFIGVGNEVLGSEKAKSLVEQSVDDLVEQRDFDNTEEAISEASAVNREDIAEETLKLNENVKCPSTESQVLRKLDNQETGLKGRDVGEQSSSEFNNNDAVYVKLVGSRVDVKEPTEVVEESLIMVDSADVVEEYGDFKSDESMGNSTGKNEIESVNRSKISILNPTHETKYLGNGDLPGATEDVMLEDQIYGKSSNSVSRIPSSYLDPDFEVNDVANNVSEDVEGEGTISDGDAGGLVFRSSDTAKQIVNEEKQSLAPTSGSGAQIPQHHLQTTEGQTLKDSEEKLEEDGDDEDHKIFDSEVLTSLLKAATSAGLDGDSGNGVFTSVDDSRVFSLKRHAGLGSSLRPVPQSNGLNISASSDLMAGAESKDSISEEEKKKLEKIQLLRVRFLRLVQRLGHSPEDSIVSQVLYQLAIDAGKHSNEAFSLESAKGMAMKLEAEGKGDIEFSLNILVLGKTGVGKSATINSIFCEEKAMTNAFEPTTSAVNEIIGTIDGVKIRVLDTPGLRSSLMEQAFNRKILSSIKKFMKKFPPDVVLYVDRLDTEDKDLNDLPLLKSITSSLGSSIWRNAIVTLTHGASSPPDKPSGSPLSYDLFVSQRSHSVQQSIRQTVGDLRLMNPNLINPVSLVENHPLCRKNGNGQKKVIWLSAPFPTLPYLLSSLLQSFTHPKLSTDQGGENVDSDIELGNMTDTDEENDDVYDQLPAFKPLRRSDIAKLSKEQRKAYFEEYDYRVKLLRKKEWRQELKRLREMKKKCKDGGNDNVHVGEDGDQESGSPATVPVPLPDMVLPPSFDADNPAYRYRSLDAMSRHLARPVLITRCWDHDCGYDGVSLEENLAIAGMFPTEISVQVTKGKNEFNIHFDSSVSAKHGENGSTMAGFNIQTIGRQVAYILRGETKIKNFQTNKTAAGVSITFSGKNVAAGLKIEDQIAVGRRLVFVGSTGAILSQNDAAYGANFEIRLKENDFPIGQDQATLGLSLMKWRNDFALMGNLQCHFSVGQSSKMAFHVGLNNKLSGQITVRTSSLEQLQIALMGFLPIAITIFRSLCPGSVLFHCTDVVIHLSRSDSKL* 1292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3014204 3018323 + Vvi5g305 Vvi5g305 786447

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g305 1291 PANTHER GTPASE, IMAP FAMILY MEMBER-RELATED 876 1272 IPR045058 -
Vvi5g305 1291 PANTHER GTPASE, IMAP FAMILY MEMBER-RELATED 464 865 IPR045058 -
Vvi5g305 1291 PANTHER LOW QUALITY PROTEIN: TRANSLOCASE OF CHLOROPLAST 159, CHLOROPLASTIC-LIKE 876 1272 - -
Vvi5g305 1291 PANTHER LOW QUALITY PROTEIN: TRANSLOCASE OF CHLOROPLAST 159, CHLOROPLASTIC-LIKE 464 865 - -
Vvi5g305 1291 Pfam Translocase of chloroplast 159/132, membrane anchor domain 1001 1266 IPR024283 -
Vvi5g305 1291 ProSiteProfiles AIG1-type G domain profile. 671 904 IPR006703 GO:0005525
Vvi5g305 1291 Pfam AIG1 family 674 828 IPR006703 GO:0005525
Vvi5g305 1291 MobiDBLite consensus disorder prediction 979 1003 - -
Vvi5g305 1291 MobiDBLite consensus disorder prediction 1 28 - -
Vvi5g305 1291 MobiDBLite consensus disorder prediction 478 517 - -
Vvi5g305 1291 MobiDBLite consensus disorder prediction 478 500 - -
Vvi5g305 1291 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 670 801 IPR027417 -
Vvi5g305 1291 MobiDBLite consensus disorder prediction 159 183 - -
Vvi5g305 1291 Coils Coil 961 981 - -
Vvi5g305 1291 Gene3D - 647 887 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g305 - - - vvi:100266571 2424.82
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi5g305 Vvi7g276 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g305 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004744 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 2 1 1 2 1 2 42