Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g310 ATGGTCGATAATCCTGGCGCTAGTGCTTCAACTGATGATGGCAGTATCAAGGAGCAAGACCGTTTGTTGCCAATCGCAAATGTTAGCCGGATCATGAAGCAAACTTTGCCGACTAATGCAAAAATCTCTAAGGAAGCCAAGGAGACGATGCAGGAGTGTGTGTCGGAGTTCATTAGTTTTGTCACAGGAGAAGCATCCGAGAAGTGCAAGAAGGAGAGAAGGAAGACGGTGAACGGGGACGACATCTGCTGGGCTCTGGCAGCACTAGGCTTTGATGACTATGCCGGGCCATTAAAAAGGTACTTACAAAGGTATAGAGAATTAGAAGGAGATAGAGTACTGAATCAAGAGAAGGCTGGCAACACTGAAGAAAACGATGAACCATCCTCATGTAGAGGTAGCCAACCAAGGAATTGA 417 46.52 MVDNPGASASTDDGSIKEQDRLLPIANVSRIMKQTLPTNAKISKEAKETMQECVSEFISFVTGEASEKCKKERRKTVNGDDICWALAALGFDDYAGPLKRYLQRYRELEGDRVLNQEKAGNTEENDEPSSCRGSQPRN* 139
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3059659 3060076 - Vvi5g310 Vvi5g310 786452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g310 138 MobiDBLite consensus disorder prediction 113 138 - -
Vvi5g310 138 Gene3D Histone, subunit A 10 135 IPR009072 GO:0046982
Vvi5g310 138 ProSitePatterns NF-YB/HAP3 subunit signature. 53 69 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vvi5g310 138 SUPERFAMILY Histone-fold 19 123 IPR009072 GO:0046982
Vvi5g310 138 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 22 86 IPR003958 -
Vvi5g310 138 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 126 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vvi5g310 138 PRINTS CCAAT-binding transcription factor subunit A signature 50 68 - -
Vvi5g310 138 PRINTS CCAAT-binding transcription factor subunit A signature 69 87 - -
Vvi5g310 138 PRINTS CCAAT-binding transcription factor subunit A signature 88 106 - -
Vvi5g310 138 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-4-LIKE 1 126 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi5g310 Vvi7g243 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14839 PF00808 CBFD_NFYB_HMF 7.90E-28 CL0012 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g310 K08065 - vvi:104879231 280.796