Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g311 ATGGAGGAGATGGATTTAGTTCAAATAAATCATGATGGAGAAGGCACTGAAGATGCATCTATTGCACAGTCACCATCTTCAGAACCCACTGGTATATGTGATGTCTTTGGAAATCCAGAGATACTTCCTCGAATTGGAGATAAATACCAAGTTGACATTCCAACTCTTAGTCCAGAATCTGATTATCTTCAGCTTACAAGTTACCCAACTGATGCTGCAACAGTGACTGGCGCTCCTCACTGTTTTTTATTGGGATTACCCGTACCAATTATGTGGGTCACTGAGGAAGCTCATATTCTTATAAAAAGAGAAGACTTGGAACTTAAAATTGAGCCTTCAGGCGTTTCAATGGAGAATGAGCTATGCATGGGAGAATCAGTGAACTTAGCTTTGCAACTAGAAATGAAAAAGGAAATGCATCAAAAGTGCGGAGGCAAGGGCCACTATCCAGCTCCTGGCTCCTTAAGTGACTCATGGAGTGATCTTGAGAAAGCCACTTTTCTCCTTGGTCTATATATTTTTGGGAAGAACCTTGTTCAGGTGAAGAGATTTGTTGAGAGTAAAAAGATGAGAGATTTGCTATCATTTTATTATGGGAAGTTTTATAAGTCTGCTGAATACCGTAGATGGGCTGAGTGCCGGAAAATGAGAAGCAGAAGGTGTATTTATGGGCAAAGGATTTTTACTGGACTGAGGCAGCAGGAATTGTTGTCTCGTTTGCTTCCCCATTTGTCAGAGCAGCGTCAAAATATTTTGCTGGAGGTCTCTAAGACATTTGGAGAGGGAAAAATTTTGCTAGAAGAATATGTCTCCACTTTAAAGGCCACAGTTGGCATGAATATTTTCATAGAAGCAGTTGGGATTGGTAAAGGGAGGCAAGATCTCACTGGCATAGCCCTGGAGCCTCTGAAGCATAATCAAGTTGCTCCTGTCCGCCCAGAAATGCCAATTGGCAAAGCATGCTCCTCTCTTACACCCCAGGAAATTATCAAGTGTCTAACCGGTGATTTCCGGTTAAGCAAAGCTCGCTCAAGCGATCTGTTCTGGGAGGCTGTTTGGCCTCGTTTGCTTGCTAGAGGATGGCACTCTGAACAGCCTCGGGGTCATAATTATGCTGCTGGTTCCAAGCAACCTTTGGTCTTTCTTATCCCTGGTGTTAAAAAGTTCTCGAGAAGGAAACTAGTGAAAGGCAGCCACTATTTTGATTCTGTTAGTGATGTCCTGAGTAAAGTTGCTTCAGATCCTGGGCTTCTTGAATTTGAGATTGAAGCAGATGAAGGCAACAAAAGCAAGGAAGAGTCTGGGTTGACCAATGAGACAAAACTGGACAAAGATGATTTATCTGATCAGCGACACCATTGTTATCTTCAGCCACGAACTCCAAACCGCAATGTGGATATTGTGAAGTTCACTGTTGTTGATACAAGTCTAGCTAATGGAGCAAAATACAAAGAGAAAGAAGTGAGAAGCTTACCATTTGAATCTTCAAATACTTCCACCTCCAGTAGCCATTTCGAAGAAAATGATGAGGATACTTCTGAGGAGCTTGTTGTGGATGAATCAAACTCAGACTCTACTAGTTTACCTGCAAAAGTTCCCAAGAGCCAGAACACAAATATGTATAATGCCAAGAAGCAAAGCAGGGCTCCTAAGTGCCACTTGGGTCGCAAGATGAAGCCTGATATGTCAAACTATTTGGCTCCTGTCACAAAACGGCGTCGGAGATTAACTGCTTGTAGTCGTGCAGAGACAAGCCAGAGCACAATCACTTTCTTGGTGGGTCCAGAACTAAAACAAGAGGAGTCTGGTGGCTGCATAGGAAAGCATGATTCTGATGAGATCATTCACTGTAAAGTGGTTCCACTAACAGAGAAGTTATGTTCCTCCAGTTCCTCATGTAAAGACAGCAGGATTGATGGCAGAGAAGGCATGCTGAGTAGTAACTGTTCAGGTGCAGAACATCCTAGAGAGGAACTTCAATTCAGGACGATGATCGACTTGAATTTACCTGTTCTTCCAGATGCTGAAACTGGTGAGCCTGTCTTGGTAGCATCATCGGAGAGGCAAGATGATCAAGCAAGCAAGCAGGCAGATGATCCAAATGCACTGAAAACCTCAATAGGTGTGGCTAATTCTGAGCAACCACCCAATATGAACTCTCGGAGGCAGAGCACAAGAAACCGACCCCTCACCACTAAAGCATTGGAGGCTCTTGCAAGTGGCTTTTTAAATACAAGGCGACGACGACGGAAGAGGACAGAAGCCTTTCCAGGAGAGGACTTGATATCAAGACCTTCTAGACGTGCTCGCTGTAAGATGAGAGTTACCGAGAGCTTTGGTACTGGAATCATGGACTCAAAAGTACAAGAAGAAGGAAATGGTGTATGCAATGACAATGAGGATATGTTCAGTAAATTTCACATTAGATCCGAGGGAGAAGGGGCTCAATTCTATTCTGAAAAGTATCAGCGCCTATCTCCATTCCTAATCAAAATTCAGGTGAACCTTTCTTCCCAGGCTTCTGCCATTGCTGCTTCTTGGTAA 2544 43.44 MEEMDLVQINHDGEGTEDASIAQSPSSEPTGICDVFGNPEILPRIGDKYQVDIPTLSPESDYLQLTSYPTDAATVTGAPHCFLLGLPVPIMWVTEEAHILIKREDLELKIEPSGVSMENELCMGESVNLALQLEMKKEMHQKCGGKGHYPAPGSLSDSWSDLEKATFLLGLYIFGKNLVQVKRFVESKKMRDLLSFYYGKFYKSAEYRRWAECRKMRSRRCIYGQRIFTGLRQQELLSRLLPHLSEQRQNILLEVSKTFGEGKILLEEYVSTLKATVGMNIFIEAVGIGKGRQDLTGIALEPLKHNQVAPVRPEMPIGKACSSLTPQEIIKCLTGDFRLSKARSSDLFWEAVWPRLLARGWHSEQPRGHNYAAGSKQPLVFLIPGVKKFSRRKLVKGSHYFDSVSDVLSKVASDPGLLEFEIEADEGNKSKEESGLTNETKLDKDDLSDQRHHCYLQPRTPNRNVDIVKFTVVDTSLANGAKYKEKEVRSLPFESSNTSTSSSHFEENDEDTSEELVVDESNSDSTSLPAKVPKSQNTNMYNAKKQSRAPKCHLGRKMKPDMSNYLAPVTKRRRRLTACSRAETSQSTITFLVGPELKQEESGGCIGKHDSDEIIHCKVVPLTEKLCSSSSSCKDSRIDGREGMLSSNCSGAEHPREELQFRTMIDLNLPVLPDAETGEPVLVASSERQDDQASKQADDPNALKTSIGVANSEQPPNMNSRRQSTRNRPLTTKALEALASGFLNTRRRRRKRTEAFPGEDLISRPSRRARCKMRVTESFGTGIMDSKVQEEGNGVCNDNEDMFSKFHIRSEGEGAQFYSEKYQRLSPFLIKIQVNLSSQASAIAASW* 848
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3068209 3074183 + Vvi5g311 Vvi5g311 786453

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g311 847 Gene3D - 153 216 - -
Vvi5g311 847 PANTHER ATROPHIN-RELATED 526 805 - -
Vvi5g311 847 PANTHER ATROPHIN-RELATED 5 527 - -
Vvi5g311 847 MobiDBLite consensus disorder prediction 486 535 - -
Vvi5g311 847 ProSiteProfiles SANT domain profile. 154 206 IPR017884 -
Vvi5g311 847 MobiDBLite consensus disorder prediction 706 730 - -
Vvi5g311 847 PANTHER PROTEIN, PUTATIVE-RELATED 526 805 - -
Vvi5g311 847 PANTHER PROTEIN, PUTATIVE-RELATED 5 527 - -
Vvi5g311 847 MobiDBLite consensus disorder prediction 422 449 - -
Vvi5g311 847 SUPERFAMILY Homeodomain-like 148 198 IPR009057 -
Vvi5g311 847 MobiDBLite consensus disorder prediction 519 535 - -
Vvi5g311 847 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g311 - - - vvi:100245979 1580.46
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi5g311 Vvi7g242 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g311 . Blo12g00019 Bda03g01199 . Bpe04g01130 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa06g01530 . . . . . . Bpe05g00841 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001104 2 4 2 1 3 2 4 2 2 2 2 2 4 2 2 4 2 4 4 2 2 1 2 2 3 2 2 7 4 3 80