Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g315 ATGAACATGATTATAGCAATCAGACTTCGTTTTGCATTCGAGATCCCAATTCGTGGTTGGACATTCCGCATATCCTCTCTTTCTCTCTCTCTAGCGATCTCGCGATCTCTTTTCTCTCTAGATTTTGGAGCACTCGGATATGGAGTACAGGACATTGGAGATCAATGTCATCTCTGCAAAAGACCTCAAGGACGTCAACCTTATCTCCAAGATGGACGTCTACGTCGTCGTTTCTATCAACGGCGACTCTCGTTCCAAGCAGAAAACCCCCGTCGACAGAGACGGCGGCACGAACCCCACCTGGAACTTCCCAATGAAGTTCACCGTCGACGAATCCGCCGCTCAGCAGAACCGCCTCACTCTGTCCTTCAAGCTTCGCTGCGAGCGCACTCTCGGCGACAAAGACATCGGCGAAGTCAACGTCCCTATCAAAGAGCTCCTCGACCCAGCCGGCGAATCCAAACCCATTCAGTTCGTCAGTTATCAGGTCAGAAAACCTTCCGGAAAGCCCAAAGGCGAGCTGAATTTGTCCTACAAGTTTGGCGAAAAATCCATGTCCCAGCCGATGAGCCGGTCACGGCATATCCTGCCGGCGTAGCGGCCTCCAGTTCGGCCTACCCGCCGGTTGGGGCGTATCCTCCGCCACCGGCTGGATATGGGTATCCGCCACAGCAGCCCCCTCCGCCTGGGTATGGATATCCACCACCTCCGGCGCCGGCGGGATATGGGTATCCACCACCACAGGCGGGATACGGATATCCACCGCAGCAAGGGTACGGGTACCAGCCGGCGGTGCAAAAGCCGGCAAAGAAGAGCAAGTTTGGACTAGGGATGGGGGCTGGGCTGTTGGGAGGAGTGGTTGGTGGGCTTTTGATCGGTGATTTGGTTTCCGATGCAGCTGGTGGTGGCTTCGACCCCGGATTCGATGACGGTGGATTTGAAGGAGTGGAGAGAAAGAGGGAGAGGAGAGAAAATTTTAAAAACCCCAACATCCCAAACCCTAACGGGGAATTTGAAAGCACGATGAGGCCACTGGACGAGAACGAGACCACGGCAGTATTCGAGAAGCTCTTCAAATTCACGGGCAACAATCTCAAGAACATCGTCGAAAACCCATCATACGAAGGCCCTGATCCTAACGCTGGCAGATACTGTTTTCGTCTCCAGAAGAACCGAGTTTACTACGTGAGCGAGTCGATGGTCAAGCGAGCCACCAACATTGGCCGAGCCCAGCTGGTCTGGCTTAAACCCACATCGGAAATGTCGTTTTTATACGGAAATCATGTTTTGAAAGGTGGGTTGGGGAGGATTACGGAGAACATTGTGGCGGGTGATGGGGTTGTGGTGTTTTCCATGTCGGATGTGCCTTTGGGGTTCGGGATTGCGGCAAAGTCGACTCAGGATTGTAGGAAGTTGGACCCCAATGGGATTGTTGTGCTCCATCAGTCGGATATCGGGGAGTATTTGAGAATGGAGGATGAACTTTGA 1488 53.29 MNMIIAIRLRFAFEIPIRGWTFRISSLSLSLAISRSLFSLDFGALGYGVQDIGDQCHLCKRPQGRQPYLQDGRLRRRFYQRRLSFQAENPRRQRRRHEPHLELPNEVHRRRIRRSAEPPHSVLQASLRAHSRRQRHRRSQRPYQRAPRPSRRIQTHSVRQLSGQKTFRKAQRRAEFVLQVWRKIHVPADEPVTAYPAGVAASSSAYPPVGAYPPPPAGYGYPPQQPPPPGYGYPPPPAPAGYGYPPPQAGYGYPPQQGYGYQPAVQKPAKKSKFGLGMGAGLLGGVVGGLLIGDLVSDAAGGGFDPGFDDGGFEGVERKRERRENFKNPNIPNPNGEFESTMRPLDENETTAVFEKLFKFTGNNLKNIVENPSYEGPDPNAGRYCFRLQKNRVYYVSESMVKRATNIGRAQLVWLKPTSEMSFLYGNHVLKGGLGRITENIVAGDGVVVFSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEYLRMEDEL* 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3124104 3131662 + Vvi5g315 Vvi5g315 786457

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g315 495 MobiDBLite consensus disorder prediction 150 167 - -
Vvi5g315 495 PANTHER 60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 HOMOLOG 413 495 - -
Vvi5g315 495 PANTHER 60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 HOMOLOG 341 413 - -
Vvi5g315 495 Pfam UPF0113 PUA domain 413 490 IPR005155 -
Vvi5g315 495 MobiDBLite consensus disorder prediction 85 117 - -
Vvi5g315 495 Gene3D - 342 414 - -
Vvi5g315 495 SUPERFAMILY PUA domain-like 413 486 IPR015947 -
Vvi5g315 495 MobiDBLite consensus disorder prediction 320 342 - -
Vvi5g315 495 PANTHER CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 341 413 - -
Vvi5g315 495 PANTHER CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 413 495 - -
Vvi5g315 495 SMART pua_5 411 486 IPR002478 GO:0003723
Vvi5g315 495 MobiDBLite consensus disorder prediction 85 169 - -
Vvi5g315 495 Pfam UPF0113 Pre-PUA domain 343 413 IPR040598 -
Vvi5g315 495 Gene3D PUA domain 415 495 IPR036974 GO:0003723
Vvi5g315 495 ProSiteProfiles PUA domain profile. 410 486 - -
Vvi5g315 495 SUPERFAMILY Pre-PUA domain 342 414 - -
Vvi5g315 495 MobiDBLite consensus disorder prediction 129 145 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g315 K07565 NIP7; 60S ribosome subunit biogenesis protein NIP7 - vvi:100264731 297.745
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g315 . . Bda03g01200 . Bpe04g01131 . Bma04g01108 . . . Cma06g01493 . Car06g01284 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo06g01489 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007729 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 35