Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g320 ATGATCAGGCTGCCAAAAATCATGGAAGAAGAACTAATGGACAGTCCTAAAGGAGATATTAAAGTAAGTTTTGGCTATCAATGTAATGGCAACAATGGTATCACTTGTGAGGTTTCCAATGGATATGAAATCATGCCTAGGATTAATGTCCGAAGAACCAGCAGTTTCTCTTGCTTATCTGGGGCTGCCTTAAGCGCCAATGCCACATTGGCAAACACAAATATCTGCAATGGTTTAATTGGGGCAGAAAAACTTCCTAGTTGGGATTCCCCCAATTCATTTCGCAGGGTTCCCTCTTCACCATCCCTTTCAAAGTTGGATATCTTATCATCTTCTCTACAAAGTAGTCTGTCAAATTTAAGTTGCAGTCCATCCACACAAAGTGAGGCTCTTGAAAATGATTCCTATTCATTGAAATCCATGAGTGCTCCTTCCAGAAGTGATGGTTTCCTAAATGCTATGGAAGTTCAAGTGGCAGGTGGAGCTGCTGGTGAAGACAGAGTTCAAGCTGTTTGTTCTGAAGAAAATGGGTGGCTTTTTTGTGCAATCTATGATGGATTCAATGGAAGAGATGCAGCTGATTTTCTGGCTGGAACATTGTATGAAACTATTGTATGCTACTTTAATTTATTGGACTGGGAATCAGAACAGGAGTTTGTTAGAACTTCCAATGGTTTAGGTTTGGATGGTTCCCTCCAAAATATTCTAGATGATGTGATATCTGATTCGTTTAGGCATAGAGTGCTTGATAGCCTCCAACGTTCTCTCAGTCAGGCAGAACATGATTTCTTATACATGGTTGAGCAGGAAATGGAAGATCGCCCTGATTTAGTGTCTGTTGGGTCTTGTGTTTTGGTTGTGCTTCTCATAGGAAACGATTTGTACACAGTGAATTTAGGAGACAGTAGAGCTGTATTGGCAACATATACTAAAGATTACATGAATGAGGATGAGAGATTGAAAGCCATCCAGCTCACAGACAGTCATACTGTTGATAATGAAGTTGAAAGAAATCAGCTTCTATGTGATCATCCTGATGATCCCTCAGTAATTGTTGGTGGGAGAGTAAAAGGAAAATTGAAGGTTACTCGTGCATTGGGAGTTGGTTACCTGAAACAGAAAAAACTGAATGATGCTTTGATGGGTATTCTTCGAGTTCGGAACCTCTTAAGTCCTCCATATATCTCTACACAGCCATCATTGAATGTCCACAATATCTCAAAGTCCGATCATTTTGTTATAGTTGGGAGTGATGGTTTGTTTGACTTCTTCAGCAATGATGAGGCGGTAGAGCTTGTCCATTCTTATATTTTGACCAATCCTTCTGGTGATCCAGCAAAGTTTCTATTGGAACAGCTAGTACTGAGAGCAGCAAATTGTGCAGGTTTCAGTATGGAAGAATTAATGAGTATCCCAGCTGGTAGGAGAAGGAAATACCATGATGATGTGACTGTAATTGTGATCATCCTTGGAACAAATCACCGCACTTCAAAGGCATCAACTTGCCTATAA 1512 40.28 MIRLPKIMEEELMDSPKGDIKVSFGYQCNGNNGITCEVSNGYEIMPRINVRRTSSFSCLSGAALSANATLANTNICNGLIGAEKLPSWDSPNSFRRVPSSPSLSKLDILSSSLQSSLSNLSCSPSTQSEALENDSYSLKSMSAPSRSDGFLNAMEVQVAGGAAGEDRVQAVCSEENGWLFCAIYDGFNGRDAADFLAGTLYETIVCYFNLLDWESEQEFVRTSNGLGLDGSLQNILDDVISDSFRHRVLDSLQRSLSQAEHDFLYMVEQEMEDRPDLVSVGSCVLVVLLIGNDLYTVNLGDSRAVLATYTKDYMNEDERLKAIQLTDSHTVDNEVERNQLLCDHPDDPSVIVGGRVKGKLKVTRALGVGYLKQKKLNDALMGILRVRNLLSPPYISTQPSLNVHNISKSDHFVIVGSDGLFDFFSNDEAVELVHSYILTNPSGDPAKFLLEQLVLRAANCAGFSMEELMSIPAGRRRKYHDDVTVIVIILGTNHRTSKASTCL* 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3160875 3165959 - Vvi5g320 Vvi5g320 786462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g320 503 Pfam Protein phosphatase 2C 167 439 IPR001932 -
Vvi5g320 503 Gene3D - 118 499 IPR036457 -
Vvi5g320 503 CDD PP2Cc 163 490 IPR001932 -
Vvi5g320 503 SUPERFAMILY PP2C-like 164 491 IPR036457 -
Vvi5g320 503 SMART PP2C_4 141 488 IPR001932 -
Vvi5g320 503 PANTHER PROTEIN PHOSPHATASE 2C 40-RELATED 10 221 - -
Vvi5g320 503 PANTHER PROTEIN PHOSPHATASE 2C 40-RELATED 233 502 - -
Vvi5g320 503 ProSiteProfiles PPM-type phosphatase domain profile. 150 490 IPR001932 -
Vvi5g320 503 PANTHER PROTEIN PHOSPHATASE 2C 233 502 IPR015655 GO:0004722|GO:0006470
Vvi5g320 503 PANTHER PROTEIN PHOSPHATASE 2C 10 221 IPR015655 GO:0004722|GO:0006470
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g320 - - vvi:100242615 936.791