Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g321 ATGTTCCTGCTCCAATCCTCCGCTACTCTACTCTCCTTCTTCAAGGGCGATGATGGTCGACGAGCTTTGATATTGGATTCTACCATCTTCCATCCCCAAGGTGGTGGTCAGCCCTCTGACACCGGTTTCATAGCCATTTCGGAGTCTGACATCAAATTCATAGTACAGGATGTTCGATCCAAGGACGGAGTAGTATTTCACTATGGTTTTATCGAGAATTCTAATGAGGAATTGGAATCAAAACTCGAGAAAGGGAAGGAAGTTTCTTTGCACGTGGATGAGTCCCGGCGCAAACTCAATTCTAGGCTCCACTCAGCTGGGCATTTGCTAGACATATGTATGCGGACTGTGGGATTAGGAAATTTAGAGCCAGGAAAAGGCTACCATTTTCCTGATGGACCATTTGTTGAATATAAAGGTGTGGTTCCACAGAATGAACTGCAAGGCAAGCAAAAGGAGTTGGAGCTAGATGCTAATGCATTGATTTCTAGAGGGGGAAAAGTTTCTGCTGTTGTTTTACCATATGCAGAAGCTGTGGAACTTTGTGGTGGTTGCCTTCCTGATTATATACCTAAGAGCAGCAATCCTCGTATTTTAAAGCTTGGGGACAATCCTGGCTGCCCTTGTGGAGGGACTCATGTTTCCGATATTTCAGAGATCATAAGCGTGAAGGTTACTCAAATTCGGACAAAGAAGGGAGTCACAAAAGTATATTACACCATTGGCTCCTGA 732 44.54 MFLLQSSATLLSFFKGDDGRRALILDSTIFHPQGGGQPSDTGFIAISESDIKFIVQDVRSKDGVVFHYGFIENSNEELESKLEKGKEVSLHVDESRRKLNSRLHSAGHLLDICMRTVGLGNLEPGKGYHFPDGPFVEYKGVVPQNELQGKQKELELDANALISRGGKVSAVVLPYAEAVELCGGCLPDYIPKSSNPRILKLGDNPGCPCGGTHVSDISEIISVKVTQIRTKKGVTKVYYTIGS* 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3167516 3178049 - Vvi5g321 Vvi5g321 786463

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g321 243 Gene3D - 1 92 - -
Vvi5g321 243 PANTHER THREONYL AND ALANYL TRNA SYNTHETASE SECOND ADDITIONAL DOMAIN-CONTAINING PROTEIN 1 240 - -
Vvi5g321 243 SMART tRNA_SAD_4 196 238 IPR012947 GO:0004812|GO:0005524|GO:0043039
Vvi5g321 243 Pfam tRNA synthetases class II (A) 21 95 IPR018164 GO:0000166|GO:0004813|GO:0005524|GO:0006419
Vvi5g321 243 SUPERFAMILY ThrRS/AlaRS common domain 93 242 IPR018163 GO:0000166
Vvi5g321 243 PANTHER ALANYL-TRNA EDITING PROTEIN 1 240 - -
Vvi5g321 243 Gene3D - 93 243 - -
Vvi5g321 243 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 1 227 IPR018165 GO:0003676|GO:0004813|GO:0005524|GO:0006419
Vvi5g321 243 SUPERFAMILY Translation proteins 17 74 IPR009000 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g321 - - - vvi:100244170 473.011
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g321 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0017250 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 6