Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g328 ATGCCTTTGGTCAAATCCTTGGCTTCAAACTCATCATCTCTTTTCTCCCCCAAGGACGCAAGAATGGCTATCCAAGCCTCTTCTTATAAGGTTTTGTCACAAAGAACAGCATCATCTTTTAGGAGTATGAATTCAGTTAGCTTATTGTATTTAAGAGGAAGCTCTTCAGTTCATGTTCCCTCCCTTTTAAAGACTGCAACCTATTCTAGTTATTCAAGTGATAATTCTTCTTCTTCTTCAAAGCGGCGATCTCGTGGACCTGTTATGGCAGCAAAGAAAGCATCTGAAGCAGCAAAGCAAGAGGATGGAAGATACAAGCACACAGTTGATCTGCCAAAGACAGCATTTGGCATGAGAGCAAACTCAACTTCAAGGGAGCCCGAAATTCAGAAATTATGGGATGATAACCAGGTGTTCAAAAGAGTGGTTGATAGGAATAATGGGGGAAATTTCATTCTTCATGATGGCCCTCCATATGCTAATGGTGATCTACACATGGGTCATGCTCTAAACAAGATTTTGAAGGATATAATTAATCGTTATAAGCTTCTTCAAAATTATAAAGTTCATTATGTGCCTGGTTGGGATTGCCATGGCCTACCAATTGAGTTGAAAGGCAAACATGAACTATGGATTAATCCTTGTCTTGACACCAATTGCTGTAAAGTGCAAATATGTAAAAAGCTTCCATCCAGAAAATGTTATGGTGGAAAACTGGAACAACTGCTATTCAAAAAGTACCCTCTTCTTAAATTTTGGCTTAGGACAAGAAAAAGAAGCGCCCTAAATCAAAACATTTCTGGAGTTATATGTGGAGACCTTGTACCCCTCATTTTTACACAAAACTATCTTATTCTTTGTAGACCCTTTTTCTTTTCAAATCTAATTTTTCAAGCTTTTTTCATTTGTATGAAAAAGCATTATTTTTTCTTCATGGTACACATTCGGTCTACTTTTTGTGGAAGTCATACTTCAAATTCATATCAAAGAATAATTTTTCTACAGTCATTGGATCAGGATGCTAGAAGGGAGCTCACACCATTAAAGTTGAGAGCAAAGGCATCCAGATTTGCCAAAGCGACTGTTAAGAACCAGATGGCATCATTTAAGCGCTATGGAGTATGGGGAGACTGGAATAATCCTTATCTAACTCTTGATCCAGAATATGAAGCATCCCAGATCGAAGTGTTTGGCCAAATGGCCTTGCAAGGGTATATCTATAGAGGCAGAAAGCCAGTTCACTGGAGTCCCTCGTCACGTACTGCTCTTGCAGAGGCTGAGTTGGAGTATCCTGAGGGGCATATTTCAAAGAGCATATATGCTATTTTCAGATTAGTGAGTGCACCTGTAACTTCAGGTACCTCATTAGAGGATTTTCTTCCAGATTTATGCTTGGCTATATGGACCACAACCCCTTGGACTATTCCGGCCAATGCTGCTGTTGCAGTGAATGCTAAGCTTCAATACTCTGTGGTAGAAGTACACTCACCCTTGGAAGATGTTTCAAAGTCCAAACAGAATGAGAAGGGAAGGCTTGGAAATGCTCTGAAGGAACAAAAAAATCTTTTTCTTGTAGTAGCATCAGATCTTGTACCAACACTTGAAGCAAAATGGGGCCTGAAACTTGTCATCAAGAAAACACTATTGGGATCAGATCTTGAAAACTGCAGGTATATCCATCCAATAGACAAAAGGGAATGCCCTGTTGTCATTGGAGGAGATTATATTACTACAGAATCGGGAACTGGATTGGTCCATACAGCTCCAGGTCATGGTCAGGAAGATTATGTAACTGGCATGAAATATGGACTGCCTATTCTTTCTCCTGTAGATGATGATGGAAAGTTCACTGAAGAAGCTGGCCAATTCAGTGGGCTAGATGTACTTGGGGATGGTAATGCTGCTGTCGTAAGATTCTTGGATGAGAACTTGTCTATTATCATGGAAGAACCATACAAACACAAGTATCCATATGACTGGAGAACTAAAAAACCTACAATATTTCGAGCAACTGAACAATGGTTTGCATCAGTAGAAGGGTTCCGGCAGGTTGCTATGACTGCAATTGGCCAAGTAACATGGATTCCAGCTCAGGCAGAAAACAGAATTTCGGCAATGACCTCAAGCCGCTCTGATTGGTGTATTTCACGGCAAAGGACATGGGGCGTCCCTATTCCAGTCTTTTATCATGTACAATCAAAAGAACCTCTCATGAACAAAGAGACGATTGATCACGTCAAATCTATAGTATCCCAAAAGGGTAGTGATGCATGGTGGTACATGACAGTAGAGGAACTGCTCCCTGATAAGTATCGTAATAAAGCCTCTGGCTATGAAAAGGGGACTGATACAATGGACGTTTGGTTTGACTCAGGTTCTTCTTGGGCTGCTGTGTTGGAGAGCAGAAATGAACTTAGTTGTCCTGCAGATTTGTATCTTGAAGGTACAGATCAGCATCGTGGGTGGTTTCAAAGTTCTTTGCTAACCAGTGTTGCTACAAAAGGAAGAGCTCCATATTCCAGTGTTATTACACATGGATTTGTACTGGACGAGAAAGGTTTCAAGATGAGCAAATCTTTGGGTAATGTTGTAGATCCACGCACGGTGATTGAAGGTGGGAAAAACCTAAAGGAAGCACCTGGCTATGGAGCTGATGTTCTGCGACTCTGGGTTTCAAGTGTAGATTATACCGGGGATGCAATGATTGGGGCTCAAGTCCTTCGTCAAATGTCTGACATATATAGGAAGTTGCGAGGAACTTTGCGATACCTTTTGGCAAATTTGCATGATTGGAAAGCTGATAATGCTGTTCCATACTGTGATCTTCCCATGATTGATCGTCATGCGCTGTTTCAGCTTGAAAATGTTGTAAAGAACATCAGAGAAAGCTATGAAAGCTACCAATTCTTTAAGATATTCCAGATCATACAAAGGTTTGCCATTGTTGATCTATCAAATTTCTACTTTGATGTTGCCAAAGATCGACTCTATGTTGGGGGCACAACAAGCTTTACAAGGAGAAGTTGTCAAACAGTTCTTGCAGCACATCTACTTTCCATTGTGAGAGTAATTGCTCCAATATTGCCTCATTTGGCTGAAGATGTATGGCAGAACCTTCCTTTTCAGTATACAAATGAAGATGGCTCTATTGCCGAATTTGTTTTTGAATCAAGATGGCCAGCCTTGAATGAGAAGTGGCTTACCTTTCCTACAGAAGAAATTGATTTCTGGGGAAAAATTCTGGAGTTGAGAACTGAGACTAACAAAGTCCTAGAGGTGGCTCGTGGTGGGAAATTGATTGGTTCCAGTCTAGATGCAAAAGTGTATCTTCATGCTTCTGATGCCAGCCTGGCCCCCAGATTGCAGGAAATGTGTTCAACTAACAATGATGCAGATACATTGCATCGCATATTCATAACATCCCAGGTGGAGATTCTTTCTTCTTTGGACGATGAACTGGTGAAAAATATACCGTACACGGGGGAGTACCTCATTCAAGGGAAGAACAAAATCTGGATTGGTGTGTCACGTGCAGATGGCTCTAAATGCGAAAGATGCTGGAATTACTCACTTCAAGTTGGTTCCTTTTCTGAGCATCCGACACTCTGTGGCCGATGTTATAATGTTGTCAATGTTCAACTCCCTGCTATGGCTGCCGTCAGCTGA 3666 41.11 MPLVKSLASNSSSLFSPKDARMAIQASSYKVLSQRTASSFRSMNSVSLLYLRGSSSVHVPSLLKTATYSSYSSDNSSSSSKRRSRGPVMAAKKASEAAKQEDGRYKHTVDLPKTAFGMRANSTSREPEIQKLWDDNQVFKRVVDRNNGGNFILHDGPPYANGDLHMGHALNKILKDIINRYKLLQNYKVHYVPGWDCHGLPIELKGKHELWINPCLDTNCCKVQICKKLPSRKCYGGKLEQLLFKKYPLLKFWLRTRKRSALNQNISGVICGDLVPLIFTQNYLILCRPFFFSNLIFQAFFICMKKHYFFFMVHIRSTFCGSHTSNSYQRIIFLQSLDQDARRELTPLKLRAKASRFAKATVKNQMASFKRYGVWGDWNNPYLTLDPEYEASQIEVFGQMALQGYIYRGRKPVHWSPSSRTALAEAELEYPEGHISKSIYAIFRLVSAPVTSGTSLEDFLPDLCLAIWTTTPWTIPANAAVAVNAKLQYSVVEVHSPLEDVSKSKQNEKGRLGNALKEQKNLFLVVASDLVPTLEAKWGLKLVIKKTLLGSDLENCRYIHPIDKRECPVVIGGDYITTESGTGLVHTAPGHGQEDYVTGMKYGLPILSPVDDDGKFTEEAGQFSGLDVLGDGNAAVVRFLDENLSIIMEEPYKHKYPYDWRTKKPTIFRATEQWFASVEGFRQVAMTAIGQVTWIPAQAENRISAMTSSRSDWCISRQRTWGVPIPVFYHVQSKEPLMNKETIDHVKSIVSQKGSDAWWYMTVEELLPDKYRNKASGYEKGTDTMDVWFDSGSSWAAVLESRNELSCPADLYLEGTDQHRGWFQSSLLTSVATKGRAPYSSVITHGFVLDEKGFKMSKSLGNVVDPRTVIEGGKNLKEAPGYGADVLRLWVSSVDYTGDAMIGAQVLRQMSDIYRKLRGTLRYLLANLHDWKADNAVPYCDLPMIDRHALFQLENVVKNIRESYESYQFFKIFQIIQRFAIVDLSNFYFDVAKDRLYVGGTTSFTRRSCQTVLAAHLLSIVRVIAPILPHLAEDVWQNLPFQYTNEDGSIAEFVFESRWPALNEKWLTFPTEEIDFWGKILELRTETNKVLEVARGGKLIGSSLDAKVYLHASDASLAPRLQEMCSTNNDADTLHRIFITSQVEILSSLDDELVKNIPYTGEYLIQGKNKIWIGVSRADGSKCERCWNYSLQVGSFSEHPTLCGRCYNVVNVQLPAMAAVS* 1222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3217985 3244322 - Vvi5g328 Vvi5g328 786470

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g328 1221 MobiDBLite consensus disorder prediction 68 84 - -
Vvi5g328 1221 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 914 1211 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vvi5g328 1221 Gene3D HUPs 339 459 IPR014729 -
Vvi5g328 1221 Gene3D - 460 620 IPR009008 GO:0002161|GO:0006418
Vvi5g328 1221 Pfam Anticodon-binding domain of tRNA ligase 946 1110 IPR013155 GO:0004812|GO:0006418
Vvi5g328 1221 Gene3D HUPs 634 902 IPR014729 -
Vvi5g328 1221 Gene3D HUPs 117 241 IPR014729 -
Vvi5g328 1221 CDD IleRS_core 652 899 - -
Vvi5g328 1221 SUPERFAMILY Nucleotidylyl transferase 104 909 - -
Vvi5g328 1221 Hamap Isoleucine--tRNA ligase [ileS]. 103 1211 IPR023585 GO:0004822
Vvi5g328 1221 Pfam tRNA synthetases class I (I, L, M and V) 338 900 IPR002300 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vvi5g328 1221 Pfam tRNA synthetases class I (I, L, M and V) 129 213 IPR002300 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vvi5g328 1221 CDD Anticodon_Ia_Ile_BEm 902 1088 IPR033708 GO:0000049
Vvi5g328 1221 Gene3D - 903 1213 - -
Vvi5g328 1221 PANTHER ISOLEUCINE--TRNA LIGASE, MITOCHONDRIAL 334 1209 - -
Vvi5g328 1221 PANTHER ISOLEUCINE--TRNA LIGASE, MITOCHONDRIAL 98 205 - -
Vvi5g328 1221 TIGRFAM ileS: isoleucine--tRNA ligase 335 1108 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
Vvi5g328 1221 Gene3D - 728 781 - -
Vvi5g328 1221 Pfam Zinc finger found in FPG and IleRS 1180 1209 IPR010663 -
Vvi5g328 1221 SUPERFAMILY ValRS/IleRS/LeuRS editing domain 437 656 IPR009008 GO:0002161|GO:0006418
Vvi5g328 1221 PANTHER SOLEUCYL-TRNA SYNTHETASE 98 205 - -
Vvi5g328 1221 PANTHER SOLEUCYL-TRNA SYNTHETASE 334 1209 - -
Vvi5g328 1221 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 158 169 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vvi5g328 1221 MobiDBLite consensus disorder prediction 68 103 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g328 K01870 IARS, ileS; isoleucyl-tRNA synthetase [EC:6.1.1.5] - vvi:100254604 1800.79
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g328 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007511 1 4 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 36