Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g329 ATGGTGAAACCACTGAACCAAAATCTCATCTTTAGAGTCCCCTCCACATGTATTTCCCGCCAGAATAAACTGTCCCATTTTCACACAAAGACTCAACTGATTCAACGGCTTCAAGATTGTAATGACATCACGTCCGTATCCTTCAGCCACACCAACGTTCTAAAATCTGGATTCTTAAACGATACCTTCACCACCAACCATCTCATTAATTCCTATGTAAGAATCCGAAGAACCAACGATGCAAGCCAGCTGTTTGAAGAAATGCGCGAACCAAATGTGATCTCGTTTACTTCGCTCATGGCCGGTTTCATCAAAGTGGGTCGGCCTAAATCAGCACTCTTGATTTTTTGTAAAATGCTCGAAAGTTGGGTTTTGCCCAATGCCTTCACATTTGCAACTGTCGTCAATGCTTGTTCAATGCTCGCCGACCTCAGAACCGGCCAAAAGATCCATTCCCATGTTGAAATGTTTGGTGTCCAATGTAACCTGGTAGTGTGTTCTTCCCTCATTGATATGTACGGGAAATGCAACAATGTAGACGATGCTCGACGGGTTTTTGACGGCATGGATTATAGGAATGTTGTTTCTTGGACTTCCATGATCACAGCGTATGGGCAGAATGCATTAGGCGAATGTGCACTGCAACTTTTCAGAGAATTCAATGGTTTGCCATTGAGCTCTCCAAACCATTTCATGTTAGCCAGTGTGATTAATGCTTGTGCAAGCTTGGGTAGGCTAGTTTCTGGGAAAGTGGCTCATGCAGCAGTGATTCGCCGTGGGCATGAATCAAATGATGTAGTGGCAAGTGCCCTGGTCGACATGTATGCCAAATGCGGGTGTATTGGTTATTCTGACAAGGTATTTAGAAGAATCCCGGATCCTTCTGTAATCCCATACACTTCTATGATCGTGGGAGCTGCCAAGTATGGGCTTGGAAAATTCTCCCTTGATATCTTTAAGGAGATGCTCGATAGAAGAATAAAACCCAATGATGTCACCTTTGTTGGGGTTTTACATGCTTGTAGCCATTCGGGTCTGGTTGATGATGGCCTTGAATATCTGCATTCCATGCACAAAAAGCATGGGGTGGTGCCTGATACTAAGCACTATACTTGTGTGGTTGATATGCTTGGGCGAACTGGTAGGCTTGATGAGGCTCACCAGTTAGCAAAGTCTATCCAAGTAGAACCAGACCAAGGAGCGCTCTTGTGGGGCACGCTTCTTTCAGCTAGTAGGCTGTATGGGAGGGTGGATATTGCTGTTGAGGCTAGCAAGTGGCTAATAGAATCAAATCAGCAGGTAGCGGCGGCATATATACGGGATTCGGCTTATGTGTTCTACGCTGGAGATGTATCTTTGTGTGCTAGAGGCAGTGAGGTGGCGAGCTTGTTGAGGGAGTTGGAGAGAAGAATGAAGGAAAGGGGTTATGTGGGAGGAAGCAGGGGGTTGGTGTCTATTGATGTGGAAGAGGAGGCCAAGGAGGAAATAGTGGGGCTCCACAGTGAGAGATTGGCCTTGGCTTTTGGGTTGATAAGCATACCTAAAGGAGTGACCATTAGAGTGATGAAGAACTTGAGAATGTGCCGGGACTGTCATGAAGCTTTCAAGCTGATTAGTGAGATTGTGGAGAGGGACTTTGTTGTGAGGGATGTAAACAGATTTCATCATTTTGAAAATGGTTCTTGCACTTGCAGGGATTTCTGGTGA 1707 45.46 MVKPLNQNLIFRVPSTCISRQNKLSHFHTKTQLIQRLQDCNDITSVSFSHTNVLKSGFLNDTFTTNHLINSYVRIRRTNDASQLFEEMREPNVISFTSLMAGFIKVGRPKSALLIFCKMLESWVLPNAFTFATVVNACSMLADLRTGQKIHSHVEMFGVQCNLVVCSSLIDMYGKCNNVDDARRVFDGMDYRNVVSWTSMITAYGQNALGECALQLFREFNGLPLSSPNHFMLASVINACASLGRLVSGKVAHAAVIRRGHESNDVVASALVDMYAKCGCIGYSDKVFRRIPDPSVIPYTSMIVGAAKYGLGKFSLDIFKEMLDRRIKPNDVTFVGVLHACSHSGLVDDGLEYLHSMHKKHGVVPDTKHYTCVVDMLGRTGRLDEAHQLAKSIQVEPDQGALLWGTLLSASRLYGRVDIAVEASKWLIESNQQVAAAYIRDSAYVFYAGDVSLCARGSEVASLLRELERRMKERGYVGGSRGLVSIDVEEEAKEEIVGLHSERLALAFGLISIPKGVTIRVMKNLRMCRDCHEAFKLISEIVERDFVVRDVNRFHHFENGSCTCRDFW* 569
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3244890 3246711 + Vvi5g329 Vvi5g329 786471

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g329 568 Pfam PPR repeat 164 193 IPR002885 -
Vvi5g329 568 Pfam PPR repeat 64 90 IPR002885 -
Vvi5g329 568 Pfam PPR repeat 195 219 IPR002885 -
Vvi5g329 568 Pfam PPR repeat 369 389 IPR002885 -
Vvi5g329 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 162 196 IPR002885 -
Vvi5g329 568 PANTHER OS12G0163600 PROTEIN 29 439 - -
Vvi5g329 568 PANTHER OS12G0163600 PROTEIN 440 547 - -
Vvi5g329 568 Gene3D Tetratricopeptide repeat domain 21 120 IPR011990 GO:0005515
Vvi5g329 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 61 95 IPR002885 -
Vvi5g329 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 295 329 IPR002885 -
Vvi5g329 568 Gene3D Tetratricopeptide repeat domain 124 248 IPR011990 GO:0005515
Vvi5g329 568 Gene3D Tetratricopeptide repeat domain 294 477 IPR011990 GO:0005515
Vvi5g329 568 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 440 547 - -
Vvi5g329 568 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 29 439 - -
Vvi5g329 568 TIGRFAM PPR: pentatricopeptide repeat domain 64 90 IPR002885 -
Vvi5g329 568 TIGRFAM PPR: pentatricopeptide repeat domain 164 189 IPR002885 -
Vvi5g329 568 TIGRFAM PPR: pentatricopeptide repeat domain 332 367 IPR002885 -
Vvi5g329 568 TIGRFAM PPR: pentatricopeptide repeat domain 94 128 IPR002885 -
Vvi5g329 568 TIGRFAM PPR: pentatricopeptide repeat domain 299 330 IPR002885 -
Vvi5g329 568 Pfam DYW family of nucleic acid deaminases 483 568 IPR032867 GO:0008270
Vvi5g329 568 Pfam Pentatricopeptide repeat domain 294 341 IPR002885 -
Vvi5g329 568 Pfam PPR repeat family 91 138 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g329 - - - vvi:100249494 1120.15
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g329 . Blo12g00020 . . Bpe04g01129 . . . Cmo08g01191 . . . . . . . . . . . . . . . Cla06g00491 . . . . . . . . . Cone4ag0156 . . Chy11g01486 . . . . . . . . . . . . Cma08g01218 . Car08g01091 . . Cpe17g00013 Bhi12g02081 . . . Hepe03g0114 . Lcy13g0186 . . . . . . . Lsi09g01416 . . Cme11g01993
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011153 1 2 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 2 1 1 1 0 1 1 0 1 1 1 1 1 29