Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g330 ATGTTTTGGGACATTTTCAAAAGGATTTTGAAGGTGGGGTTTCTGCAGAGAATTTGGTTTGGTGGCTATGGTTCATTTCTACCAACTTATCAGCGTTCTTCTATCTGGTCTCATCCAAAGACTCCACAGAGAGTCCAGAACTACAATAAGGCAATATCTCCTAACACTTTACTGATGGAGGGTTGCCCTCAGATTGCTAAAGCACCCTCAAATGCTCACCCATCTGTGAAGCTTGGAACTACTTCCTGCGATGCCCCTTCATTGCATATGTCAAGAGTCCCATCTGGGAATATTTCAGTCAAACAAGATTCGTTCTTACCTTCTGCTCCAGTCATGGAGATGTCACCCTCAAAACATGGAACTTCAAATAAATTAGTTAATCCCACTGGCCGGAGAGTGCCAAAGGTTAGAATCAAAGTGGGTTCCGTTAGTGCTGAGAAAAAAAATGCTGAAATCTATAGTGGACTTGGGCTTGATAATTCTCCATCTTCATCACTGGGGAATAGCCCTGATGAAAGTGGAGGGATGCCACTTGAATCTCAAGAGACACTGCAGGAATCTCCCACCAGCATTCTTCAGATTATGACTTCGTTCGCTGTTCCTGAGGGTGTACTGTTATCACCTCTTCATGACAGCTTCATTTGCTTGATAAGAAAGAAAAAATTTCCAAGAAACAGTAAACCTGTGCCTGCTCTTGAAGGCAGTCAAGAACAACCTGCTTTATCACCAGATGAGGCAGCTACATTGCTGGTTGATGAGCAGGTTCTAAAAGAGAAGAAAACAAGGTTAGTCGGGAAAAGTGAACGGCGAGCAGAAGTGAAGCATGGGAGTGGTATGGATTTTAAGAATGACATGGCATTTCCTTTGAAGGAAGAAGTAGAAAATCAGTTCCCAGAAGGCAAGGAGCATTTCTCCAATGACTTGAAATTCACATCTCTTTCCAACACACTACATGATGTTGGGGATTCTGGCAAAGGTACTGGCAGGGCAACTGAAATTTTCGGGGAGCCCAATAAAGATGGGTTGAAAGAAAGAGTATTCTTTTCTGACTTGGATAAGGAAGAGCCTTTGGAGCCAATAACTGGTCAAGACAGTGGCACAAGCGTGCAACGAAATGTTAAGAGTAGTTCTCTGGAAAATACTTGGGAATGCGGGGTGGCATGTTCCAATAAGAATGTTTCTGCTGATCCTAGAGAAGATGTCAGGTACAAAGGTAACAAGCTTCCTGGTCAATTTAGAGCTGACTCAGATATGTTTAGGGGTAAGGAAGATACTGATGTTGGAGAAATGGATCCTCAACAATGGAAGCTTGGCCAAAAAGCTGTATCACATGATCACGGTAGAATTACGATGTCCTGCAAGAAGGAAAAACAGCTGTGGGAGGGCAAAAAGAAGTTAAAGGGAGCCCAAATTAATGGTGAGCCTGCTCCCCATTTAGCAGAGGAAGGCTTGAGGATTGGATTTTGTTCAGCACCAAAAGATAAGCATAATTTGAAGTCCCAAAAAGATACTGGAGAGGTCGAGGATAATCCTAGAGAATTATTGACAGACAGAAAATCAGAACAGATGGCTGACCGAATAGATCCACTAAAGAGACCTGGTGAGAGGGCAAAGGTTTCTGATTTTAAGGATGTTGAGAAAGGAGGGAGTGCATTCTTTAAGTCAAAGGGAAGATCAAGCGGAAAAAGAGTTGAAAACCAGTATGCATCTGAGGCATCTTTACAAGTGGCCCTGAATCCACCTTTTACAGAAAACAGATCCACCACAAAGATGGTGCCAGCAGCAGTGGCTCCTGTAGTCATAGAAGAAAATTGGGTGTGCTGTGACAGTTGCCAGAAGTGGCGGCTTCTACCATTTGGTAAAAAGCCTGAACACCTCCCTGAGAAGTGGCTGTGTAGCATGCTAAGCTGGCTGCCTGGGTTGAACCACTGTGATATCAGTGAGGAGGAAACAACAAAGGCTCTTAATGCATTGTACCAACTTTCTATTCCTGAGAGCCAAACTAGCATGCACAATCATGTCAATGGAATTGCATCTGGAGTAACTTTGGATGATGTACGACATCCTGCCCAGAACCATCAAAATCCCAGTTCTCATGACATGCCTAATGAAGGAAAGAAGAAATATGGATGCAAAAAAATGTCGAATGCAGGTGATCTGGAGCAAACGAAGACAAAAAGTAAAAGGGAAGCTGATAATTATGGGGGTGAAGCTTCTAAGAAAGCTAAAACAGAAGATGCTTGTTATAGCGGTAAAAATTGCAATTTCAAACATGGCAGGGACCTTGGAAAGGTTTGCCTCATTTCTGACACCACTTTGCCAGCTAAGGCAACTGGGAAGGAAGTGATCAAATCCAATGAAATCTGTTATTCAGTGGATTCAAATTGTGATAAAAAGGACAAGATGCTACTTTCTGTAAAGAAACTGGAAGACCAAGCTCAGGAAAACAAGGTTTTTGTGAAGAAGGAGAATAGTGAGATGGAATTCAGAAAGGAAAAGAAAACCAAGCTGTCTATTGAGCGGGTGGAAATTATTGAGAAAAACCAGCAACACAAAATGTGTGAAGAAAAGATCGCATCTCAACAAACGTTGGACAGTATTGACTCAATGAAAAAGGATTTGGGAACTGGGAAAGTTTCAATGGCAGCCACTTCAAGCTCTTCAAAGGTTTCAGGTTCTCGTAAAACTAGAGCCAACTTCCAAGAAGTGAAAGGCTCACCAGCAGAATCAGAAGATTTGCATGCAAGCAAGAGCCTGAGGTGTAATGCCACTAATGCCCTGAAAGAAGCCAAAGATCTCAGAGACTATGCTGATCGTCTTAAGAGCTCTGGTTTTGGTTTTGAAAGTTATGAGACATACTTCCAAGCTGCTGTAAAGTTTCTTCATGGTGCTTCACTTCTAGAAACTTGCAATAGTGATGGTGGGAAAAATGGGGTGATGACTCAAATTCAGGCATATAGTACTGCAGCTAAACTTTGCGAACGCTGTGCCCATGAATATGAGAGACGGCAAGAAATGGCAGCTGCTGCTTTAGCATACAAATGCATGGAGGTGGCGTGCATGAGGGTAGTTTACTGCAAACATTCCAGTATAAATAGAGATCGGCATGAGCTGCAAGCAACTTTACAAATTGCTCCTAAAGGTGCATCTCCGTCATCTTCAGCATCAGATATCGATAATTTAAACAATCAAACAATGACTGATAAGGCTGCTCTGTCCAAGGTTTCTCATGTTGGTGGAAAGCATGTCATTGTTGCTCGTAACCATCCTAACTTTGTTCGGCTTCTTGATTTTGCACAGGATGTAAATTTTGCTATTGAGGCCTCAAGAAAATCACAGAAGGCTTTTGTGGCTGCTAATTTACTCCTGGAAGAGGCACAGAATAGGGAGGGTATCACTTCTGTTAGAAGGTCAGGTCTCAGTGGCAGTAGAGATTAA 3438 42.61 MFWDIFKRILKVGFLQRIWFGGYGSFLPTYQRSSIWSHPKTPQRVQNYNKAISPNTLLMEGCPQIAKAPSNAHPSVKLGTTSCDAPSLHMSRVPSGNISVKQDSFLPSAPVMEMSPSKHGTSNKLVNPTGRRVPKVRIKVGSVSAEKKNAEIYSGLGLDNSPSSSLGNSPDESGGMPLESQETLQESPTSILQIMTSFAVPEGVLLSPLHDSFICLIRKKKFPRNSKPVPALEGSQEQPALSPDEAATLLVDEQVLKEKKTRLVGKSERRAEVKHGSGMDFKNDMAFPLKEEVENQFPEGKEHFSNDLKFTSLSNTLHDVGDSGKGTGRATEIFGEPNKDGLKERVFFSDLDKEEPLEPITGQDSGTSVQRNVKSSSLENTWECGVACSNKNVSADPREDVRYKGNKLPGQFRADSDMFRGKEDTDVGEMDPQQWKLGQKAVSHDHGRITMSCKKEKQLWEGKKKLKGAQINGEPAPHLAEEGLRIGFCSAPKDKHNLKSQKDTGEVEDNPRELLTDRKSEQMADRIDPLKRPGERAKVSDFKDVEKGGSAFFKSKGRSSGKRVENQYASEASLQVALNPPFTENRSTTKMVPAAVAPVVIEENWVCCDSCQKWRLLPFGKKPEHLPEKWLCSMLSWLPGLNHCDISEEETTKALNALYQLSIPESQTSMHNHVNGIASGVTLDDVRHPAQNHQNPSSHDMPNEGKKKYGCKKMSNAGDLEQTKTKSKREADNYGGEASKKAKTEDACYSGKNCNFKHGRDLGKVCLISDTTLPAKATGKEVIKSNEICYSVDSNCDKKDKMLLSVKKLEDQAQENKVFVKKENSEMEFRKEKKTKLSIERVEIIEKNQQHKMCEEKIASQQTLDSIDSMKKDLGTGKVSMAATSSSSKVSGSRKTRANFQEVKGSPAESEDLHASKSLRCNATNALKEAKDLRDYADRLKSSGFGFESYETYFQAAVKFLHGASLLETCNSDGGKNGVMTQIQAYSTAAKLCERCAHEYERRQEMAAAALAYKCMEVACMRVVYCKHSSINRDRHELQATLQIAPKGASPSSSASDIDNLNNQTMTDKAALSKVSHVGGKHVIVARNHPNFVRLLDFAQDVNFAIEASRKSQKAFVAANLLLEEAQNREGITSVRRSGLSGSRD* 1146
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3254194 3263072 - Vvi5g330 Vvi5g330 786472

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g330 1145 MobiDBLite consensus disorder prediction 722 742 - -
Vvi5g330 1145 PANTHER CW-TYPE ZINC-FINGER PROTEIN 920 1137 - -
Vvi5g330 1145 PANTHER CW-TYPE ZINC-FINGER PROTEIN 20 910 - -
Vvi5g330 1145 MobiDBLite consensus disorder prediction 700 714 - -
Vvi5g330 1145 MobiDBLite consensus disorder prediction 154 186 - -
Vvi5g330 1145 Gene3D - 597 654 - -
Vvi5g330 1145 Pfam CW-type Zinc Finger 604 650 IPR011124 GO:0008270
Vvi5g330 1145 MobiDBLite consensus disorder prediction 883 900 - -
Vvi5g330 1145 PANTHER CW-TYPE ZINC FINGER 20 910 - -
Vvi5g330 1145 PANTHER CW-TYPE ZINC FINGER 920 1137 - -
Vvi5g330 1145 MobiDBLite consensus disorder prediction 156 186 - -
Vvi5g330 1145 MobiDBLite consensus disorder prediction 883 915 - -
Vvi5g330 1145 MobiDBLite consensus disorder prediction 687 742 - -
Vvi5g330 1145 ProSiteProfiles Zinc finger CW-type profile. 599 652 IPR011124 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g330 - - - vvi:100244340 1727.61
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi5g330 Vvi7g239 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g330 . . . . . . . Bma05g01045 Cmo08g01190 Cmo17g00302 . . . . . . . . . . . . . . Cla06g00492 Cam06g0529 Cec06g0529 Cco06g0533 Clacu06g0513 Cmu06g0515 Cre06g1286 . . Cone7ag0159 Cone4ag0157 . . Chy11g01485 . . . . . . . . . Sed09g1215 . . Cma08g01217 Cma17g00314 Car08g01090 Car17g00288 Cpe12g00266 Cpe17g00012 Bhi12g02083 Tan06g0860 Cmetu01g0223 Lac12g2393 Hepe03g0115 . Lcy13g0188 . . . . . . . Lsi09g01415 . . Cme11g01992
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003760 1 2 1 2 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 2 3 1 1 2 3 2 46