Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g332 ATGTTATCTCCGGGAATGGATTCTGCACGGGAAGGCGGTGGAGTTGCAGGCACAGTGCTAATCCCCATGAACTTTGTGTGGAGTTATGGTGGGAGAAGCGTGTATCTCAGTGGCTCTTTCACAGGGTGGACCAATCTTTATCAAATGTCACCAGTTGAGGGCTGCCCCACTGTGTTTCAAGTTATCTGTAGCTTAACACCCGGATATCACCAGTACAAGTTTTTTGTTGATGGGGAATGGAGACATGACGAGAACCAACCTTTTATAAGTTGTACCTATGGGATAGTGAACACTGTCCTCTTAGCTAGGGAGTCTGATTATATTCCACCAACCATTAGTCCAGCAGTGCCATCGCTAACTAACATGGATGTGGATAATGAGGCCTTTCAGCAATTGGTCAGAATTTCAGATGGTTCGCGGCATGAGGCAGTGCCAAGGATTCAAGAGACTGACTTAGAGGTCTCTCGTCATCGTGTTTCTTTGTTCTTGTCTACACACACAGTTTATGAGTTGCTTCCGGAGTCAGGCAAGGTTATTACTTTGGATGTTGATTTGCCTGTTAAGCAAGCATTTCATATTCTTTATGAGCAGGGAATTTCTATTGCTCCTCTTTGGGACTACTTCAAGGGGCGGTTTGTTGGAGTTCTTAGTGCACTGGATTTTATTTTGATTTTGAGGGAGCTTGGAAATCATGGGTCAAATCTGACAGAGGAAGAACTCGAGACACACACCATATCAGCCTGGAAAGAGGGAAAAGGATATCTGAATAGACAAATTGATGGGAATGGAAGAGCATTTTCAAGAGGTCTCATCCATGCTGGACCATATGATAATCTGAAAGATGTTGCTTTAAAGATTTTGGAAAATGAGGTGGCCACAGTTCCCATTATCCATTCATCTTCAGAAGATGGTTCTTTTCCGCAGCTTTTACACCTTGCTTCACTTTCTGGAATATTAAAATGTATTTGCAGGTATTTTAGACATTCTTCTAACTCCTTGCCGGTACTCCAACTACCAATTTTTGCAATTCCTGTTGGTACATGGGTTTCAGAAATTGGAGAAGCCAATCAAAGGCCACTGGCCAAGTTGCATCCAAGTGCTTCACTTAGTTCGGCCTTGAGCTTGTTAGTTCAAGCCCAAGTTAGTTCGATACCAATAGTTGATGACAATGACTCATTACTGGATATATATTCTCGAAGTGATATAACAGCCTTGGCCAAAAACAGAGTTTATGCACATATTAATCTTGACGACATGACTATTCATCAGGCATTGCAGCTCGGACAAGACCCTTATTCTCCATATGAGTTCAACAGTCAAAGATGTCAGATGTGTTTGCGAACCGACCCACTGCACGAAGTGATGGACCGATTAGCAAACCCAGGGGTTAGGCGGCTTGTCATTGTTGAAGCTGGCAGTAGGCGTGTCGAAGGCATCGTCTCCCTGAGGGACATTTTCAAGTTCTTACTTGGTTAG 1476 43.5 MLSPGMDSAREGGGVAGTVLIPMNFVWSYGGRSVYLSGSFTGWTNLYQMSPVEGCPTVFQVICSLTPGYHQYKFFVDGEWRHDENQPFISCTYGIVNTVLLARESDYIPPTISPAVPSLTNMDVDNEAFQQLVRISDGSRHEAVPRIQETDLEVSRHRVSLFLSTHTVYELLPESGKVITLDVDLPVKQAFHILYEQGISIAPLWDYFKGRFVGVLSALDFILILRELGNHGSNLTEEELETHTISAWKEGKGYLNRQIDGNGRAFSRGLIHAGPYDNLKDVALKILENEVATVPIIHSSSEDGSFPQLLHLASLSGILKCICRYFRHSSNSLPVLQLPIFAIPVGTWVSEIGEANQRPLAKLHPSASLSSALSLLVQAQVSSIPIVDDNDSLLDIYSRSDITALAKNRVYAHINLDDMTIHQALQLGQDPYSPYEFNSQRCQMCLRTDPLHEVMDRLANPGVRRLVIVEAGSRRVEGIVSLRDIFKFLLG* 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3279942 3300085 + Vvi5g332 Vvi5g332 786474

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g332 491 CDD E_set_AMPKbeta_like_N 25 100 - -
Vvi5g332 491 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 11 491 - -
Vvi5g332 491 PANTHER CBS DOMAIN, IMMUNOGLOBULIN E-SET-RELATED 11 491 - -
Vvi5g332 491 Pfam CBS domain 353 403 IPR000644 -
Vvi5g332 491 Pfam CBS domain 440 490 IPR000644 -
Vvi5g332 491 Gene3D Immunoglobulins 18 102 IPR013783 -
Vvi5g332 491 SMART cbs_1 359 407 IPR000644 -
Vvi5g332 491 SMART cbs_1 441 490 IPR000644 -
Vvi5g332 491 SMART cbs_1 177 226 IPR000644 -
Vvi5g332 491 SUPERFAMILY CBS-domain pair 349 490 IPR046342 -
Vvi5g332 491 Gene3D - 345 491 IPR046342 -
Vvi5g332 491 ProSiteProfiles CBS domain profile. 437 491 IPR000644 -
Vvi5g332 491 ProSiteProfiles CBS domain profile. 171 233 IPR000644 -
Vvi5g332 491 SUPERFAMILY CBS-domain pair 157 328 IPR046342 -
Vvi5g332 491 SUPERFAMILY E set domains 21 102 IPR014756 -
Vvi5g332 491 Pfam Glycogen recognition site of AMP-activated protein kinase 21 106 IPR032640 -
Vvi5g332 491 ProSiteProfiles CBS domain profile. 355 416 IPR000644 -
Vvi5g332 491 Gene3D - 148 333 IPR046342 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g332 - - - vvi:100240823 959.903
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g332 . Blo12g00021 . Bda08g00284 Bpe04g01128 Bpe14g01135 . Bma05g01047 Cmo08g01189 . . . . . . . . . . . . . . . Cla06g00493 Cam06g0530 Cec06g0530 Cco06g0534 Clacu06g0514 Cmu06g0516 Cre06g1287 Cone14ag0773 Cone15ag0779 . . . . Chy11g01484 . Blo02g00514 . . Bda13g00180 Bpe05g00844 . . . Sed09g0226 . . Cma08g01216 . Car08g01087 Car17g00287 Cpe12g00265 Cpe17g00011 Bhi12g02085 Tan06g2644 Cmetu11g2330 . Hepe03g0116 . Lcy13g0190 . . . . . . . Lsi09g01414 . . Cme11g01991
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004087 3 2 2 1 3 1 2 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 3 3 2 44