Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g335 ATGGCGCCAACAAAGAAGTCGAGAACTGTGACTAAGCGATTCTCTTACGTTAGTGACATCTCCCCCAAGAAGGACGGTGAAAAGGCTAACAAGAGTGGGCTGCGGAAGAGGAAATTATCTGACATGCTAGGGTCTCAATGGAGCAAAGAAGAGCTTGAGCGTTTCTATGAAGCATATCGCAAGCATGGGAAAGATTGGAAAAAGGTGGCTTCAGTAGTTCGTAATCGATCTGTGGAAATGGTTGAGGCACTTTACACAATGAATAGGGCTTACTTATCTCTTCCTGAGGGGACTGCTTCTGTGGTTGGACTAATAGCAATGATGACTGACCACTACACGGTTCTGGAGGGAAGTGATAGTGGACAAGAAAGCAATGATGGAACCGGAACATCACGAAAACCTCCAAAACGTGGTCGGGGAAAAATTCGGCCTAACTCATCTAAAGAATTGGATGGGCATTTTCCTGATCTGTCGCAGTCACCTTTAGCTGCATCAAGTTATGGTTGCCTTTCATTGTTGAAAAAGAAGCGCTCTGGTGGAAGTAGACCACGAGCTGTTGGAAAAAGGACACCCCGATTTCCTGTTTCATATTCATATGATAAAGATAATGGCCAGAAGTACTTTTCTCCAACTAGGCAAGGTCTGAAATTAAAGGTAGATTCTGTTGACGATGATGTTGCTCATGAGGTAGCATTAACATTGGCAAAAGCGTCACAGAGGGGTGGTTCTCCTCAAAAGGGGAAGAAATTTTATGGGAAGAAGGCAGAAGTTGAAGATAGTGGTAACAATCATTTGGATGACATAAAAGAAGCTTGTAGTGGGACGGAGGAGGGACAAAAGCTGAGTGCTGTCAGAGGAAGACTTGAAACAGAGGTTGTGGATGCAAAAATTGTACGGTCCTCTTCTCAGGGTACAAGGAAGAGAAGCAAAAAGGTTCTTTTTGGAGGAGATGAAGGCACTGCCTTTGATGCCCTGCAAACTTTGGCAGATTTATCCTTGATGATGCCTGCAACAAATATTGACACTGAGTCATCTGTTCCAGTCAAGGGAGAAAATATTGATATCGTTGATGAGTCTAAGACGCTGGATGTTATGCCTGTGAACCATAGAAGAGAAAAACCTAGAACCTTGGGAGCTAAAGTGAAAGGGAATAATTCAGTTCCTGGAGTCAACATCCCACCTCTTAAAGCATCGAAACTCGAAAAATTCTCAGCACTTGATATTAGTTCTTTCCCTGAAATAAAGGAGGGGCCTCAACCATCTATCACGGGAAGCCGGAAAAGAAAACAGAAGTCCTTTGGCTTTAAGGGTATGGAAAGTGAAACTCATTCCGATTCTAATTTGAGTGTTTCCCAAAAAACTGAGGCTACAGATGAAGGGAAGAAACCTGTGAGTAAAGGTAAACGCTCTTCTCATAGTGCTTCACACCCAAAACAAGGGAAGTTGGTAAAACCTCCAGAACGCTGTTCTTCAAGTACTGAAACCAGAAGAGAGGAGAACTATTTGGTTGTACCTGCACAGGTTTCTTCTGCCAACCAGGTTCATTTACCTACTAAAGTGAGAAGCAGGCGTAAGATGGATACTCAGAAGCCATCTTTCCAGAAAGATTTGAGGTTTGCTGAGAATTATGTAAATGACCAACCTATAATACCCATTCCTTCAGTCCAGGACAGGGCACGCACTCTTAAGGAAAAGCTTTCTAATTGCCTATCTTGCTATCGGGTACGGAGATGGTGTGCTTTTGAGTGGTTCTACAGTGCAATTGATTACCCATGGTTTGCTAAAAAGGAATTTGTGGAGTATTTGGATCATGTAGGGTTGGGCCATGTTCCAAGATTGACTCGTGTTGAATGGGGTGTCATAAGAAGTTCTCTTGGAAAACCGCGGAGATTTTCTGAGCAATTCTTAAAGGAAGAAAAGGAGAAGCTTAACCAATATCGTGATTCTGTTAGAACACATTATACTGAACTTCGTGCTGGTACCAGGGAGGGACTTCCAACTGATCTAGCACCACCTTTATCAGTTGGACAACGTGTTGTTGCTCTTCATCCCAGGACAAGAGAGATTCATGATGGAAAAGTTTTAACAGTTGATCGTACTTGGTGCCGGGTTCAATTTGAGCGACCTGAACTAGGGGTCGAATTAGTTATGGATATTGATTGTATGCCCCTAAATCCATTGGAAAACATGCCTGCATCTCTTACAAAACACAGTCTAGCTGTCAATAAATTCTTTGAGAATGTCAGTGAGCTCAAAATGAACGGAGGACCAAAAGACAGGAAAATAACAGAGTATGGGAAATTTTCTACGAGTGAGAACATGGAGAATGTCGATGGCCCTTCTCATCTTTCCCCATCAACCTATCCCATTAACAATTTATTAAAGCAGACAAAGGCGGGTTCAACAAATGCTAATTTCCATGCTAAAGTTGGATCTGGTGAAGCTGCTAATTCTCAACAAGTGGCAAATTCTCAATCTATTATACTGGCACAGAACCAAGGAAAGGAAGCTGATGTCCAAGCTCTTTCTGAGCTGACTCGTGCTCTTGACAAAAAGGAAGCAGTGTTGTGTGAATTGAGGCGCATGAATGATGAGGTGTCGGAAAACTATAAAGATGGGGACAGCTCTCTTAAAGAGTCAGATCTTTTCAAGAAGCAATATGCTGCTCTACTTGTGCAGTTAAATGAAGTTGATGAACAGGTTTCTTCTGCTTTGATTCGCTTGAGGCAACGCAATACTTATCGAGGAAACTCCCCAGTTACATGGCCAAAGCCCATGGCCAGTTTAGCTGATCCTGGTGGCCTTATGAGCTCATTTGATTGTTCTTCATGCTACACACAAGAATCGGGAACCCATGTAGTTGAAATTGTTGAAAGTTCAAGAAAGAAAGCCCGAACCATGGTAGATGCAGCTATGCAGGCAATGTCATCATTAAAGGAAGAGGGAAATAATGTTGAGAGGATTGAGGATGCTATAGATTTTGTGAACAATCGACTTTTAGTAGATGATTCTGGCATGTCAACTATGAGATCTTCTGCTGCCCCAGATCCACTTCATGGCAGTTTGGCTTCTCAGGATCAGTTTACTTCTTGTACATCAAACCCATTGTCAGGTAGTCAGGCACCTGATCTTAAGTTGAACATTTCATCTGATGACAATGAAGCACAGATCCCTGCAGAACTGATCACACACTGTGTTGCTACTTTGCTCATGATTCAGAAATGTACAGAACGACAGTTTCCACCAGCCAATGTGGCCCAGATATTGGATTCTGCTGTTACAAGTTTGCAGCCTTGCTGTTCGCAGAACCTTCCAATTTATGCAGAGATACAAAAGTGCATGGGAATCATTAGGAATCAGATATTGGCACTCATACCTACATAG 3384 42.7 MAPTKKSRTVTKRFSYVSDISPKKDGEKANKSGLRKRKLSDMLGSQWSKEELERFYEAYRKHGKDWKKVASVVRNRSVEMVEALYTMNRAYLSLPEGTASVVGLIAMMTDHYTVLEGSDSGQESNDGTGTSRKPPKRGRGKIRPNSSKELDGHFPDLSQSPLAASSYGCLSLLKKKRSGGSRPRAVGKRTPRFPVSYSYDKDNGQKYFSPTRQGLKLKVDSVDDDVAHEVALTLAKASQRGGSPQKGKKFYGKKAEVEDSGNNHLDDIKEACSGTEEGQKLSAVRGRLETEVVDAKIVRSSSQGTRKRSKKVLFGGDEGTAFDALQTLADLSLMMPATNIDTESSVPVKGENIDIVDESKTLDVMPVNHRREKPRTLGAKVKGNNSVPGVNIPPLKASKLEKFSALDISSFPEIKEGPQPSITGSRKRKQKSFGFKGMESETHSDSNLSVSQKTEATDEGKKPVSKGKRSSHSASHPKQGKLVKPPERCSSSTETRREENYLVVPAQVSSANQVHLPTKVRSRRKMDTQKPSFQKDLRFAENYVNDQPIIPIPSVQDRARTLKEKLSNCLSCYRVRRWCAFEWFYSAIDYPWFAKKEFVEYLDHVGLGHVPRLTRVEWGVIRSSLGKPRRFSEQFLKEEKEKLNQYRDSVRTHYTELRAGTREGLPTDLAPPLSVGQRVVALHPRTREIHDGKVLTVDRTWCRVQFERPELGVELVMDIDCMPLNPLENMPASLTKHSLAVNKFFENVSELKMNGGPKDRKITEYGKFSTSENMENVDGPSHLSPSTYPINNLLKQTKAGSTNANFHAKVGSGEAANSQQVANSQSIILAQNQGKEADVQALSELTRALDKKEAVLCELRRMNDEVSENYKDGDSSLKESDLFKKQYAALLVQLNEVDEQVSSALIRLRQRNTYRGNSPVTWPKPMASLADPGGLMSSFDCSSCYTQESGTHVVEIVESSRKKARTMVDAAMQAMSSLKEEGNNVERIEDAIDFVNNRLLVDDSGMSTMRSSAAPDPLHGSLASQDQFTSCTSNPLSGSQAPDLKLNISSDDNEAQIPAELITHCVATLLMIQKCTERQFPPANVAQILDSAVTSLQPCCSQNLPIYAEIQKCMGIIRNQILALIPT* 1128
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3311938 3336770 - Vvi5g335 Vvi5g335 786477

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g335 1127 SMART DIRP_2 584 685 IPR033471 -
Vvi5g335 1127 MobiDBLite consensus disorder prediction 1022 1036 - -
Vvi5g335 1127 Gene3D - 4 99 - -
Vvi5g335 1127 MobiDBLite consensus disorder prediction 237 268 - -
Vvi5g335 1127 SMART sant 43 91 IPR001005 -
Vvi5g335 1127 Coils Coil 961 998 - -
Vvi5g335 1127 MobiDBLite consensus disorder prediction 175 198 - -
Vvi5g335 1127 Pfam DIRP 583 684 IPR033471 -
Vvi5g335 1127 MobiDBLite consensus disorder prediction 116 157 - -
Vvi5g335 1127 MobiDBLite consensus disorder prediction 439 454 - -
Vvi5g335 1127 MobiDBLite consensus disorder prediction 367 394 - -
Vvi5g335 1127 PANTHER LIN-9 245 1127 IPR010561 GO:0006351|GO:0017053
Vvi5g335 1127 PANTHER LIN-9 1 245 IPR010561 GO:0006351|GO:0017053
Vvi5g335 1127 MobiDBLite consensus disorder prediction 1007 1036 - -
Vvi5g335 1127 MobiDBLite consensus disorder prediction 411 497 - -
Vvi5g335 1127 Pfam Myb-like DNA-binding domain 45 81 IPR001005 -
Vvi5g335 1127 PANTHER PROTEIN ALWAYS EARLY 1-RELATED 245 1127 IPR028306 -
Vvi5g335 1127 PANTHER PROTEIN ALWAYS EARLY 1-RELATED 1 245 IPR028306 -
Vvi5g335 1127 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 47 77 IPR017930 -
Vvi5g335 1127 MobiDBLite consensus disorder prediction 116 131 - -
Vvi5g335 1127 ProSiteProfiles Myb-like domain profile. 45 77 IPR001005 -
Vvi5g335 1127 ProSiteProfiles SANT domain profile. 42 79 IPR017884 -
Vvi5g335 1127 CDD SANT 47 81 IPR001005 -
Vvi5g335 1127 SUPERFAMILY Homeodomain-like 42 90 IPR009057 -
Vvi5g335 1127 Coils Coil 845 865 - -
Vvi5g335 1127 MobiDBLite consensus disorder prediction 249 268 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g335 - - - vvi:100261468 1985.3
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g335 . . . . . Bpe14g01136 . . . . Cma06g01485 Cma14g01632 Car06g01277 Car14g01458 . Cpe08g00199 Cpe03g01374 Bhi01g00974 . . . Hepe05g1463 . . . . . . . . . . . Cone7ag0162 Cone4ag0158 Lsi05g01524 . . Cme06g00712 Blo02g00515 . Bda11g00533 Bda13g00178 . Bpe13g00656 . Bma06g01509 . Cmo06g01480 Cmo14g01669 . . . . . . . . . . . . . Cla05g00634 Cam05g0695 Cec05g0708 Cco05g0704 Clacu05g0690 Cmu05g0657 Cre05g0729 . Csa03g01442 Chy06g00683 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003565 1 5 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 4 1 2 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14840 PF06584 DIRP 3.00E-31 No_clan Vvi TF