Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi5g338 | ATGGACCGGTACGGTCGGGCACCGGCAATGGAGGGGTCGCCGTCCGATCCGTCGCAGGAATGGACGGGGCCGGTGGCCGAAACCGGGCTGGAAGAGCCTTTGTGGCAGTTGGGATTGGGGGGCGGTGGCGAGGCGTACCCGGAGCGGCCCGACGAGGCCGACTGCATCTACTATCTGAAGACGGGCTTTTGTGGGTATGGTGCGCGGTGTCGGTTCAATCATCCCCGTGATCGTGGTGGGGTGGGAGGAACTGTTAGACCTGGTGGAGGGGAGTTCCCAGAGCGAGTGGGCCAACCAGTATGCCAGTTTTATATGAAGACAGGGACCTGTAAATTTGGTGCTTCTTGCAAGTATCACCATCCAAGACAGGGAGGAGGAACTGTTAGCCCTGTGACACTAAACTATTTTGGATATCCATTGCGTCCGGGTGAAAAAGAGTGCTCCTACTATGTGAAGACAGGACTTTGCAAGTTTGGTGAAACATGTAAATTCCATCATCCACAGCCAGATAGCATACAACTGTCAACTCCAGGACCTGCAGCTCTGCCTGCACCTGTACCAGCACACACTTTATATCCCACGGTGCAGTCTCCATCAGTTCCTTCATCTCAACAATATGGGCTAGTAGTCGCAAGGCCTCCACTGTTACCAAGTTCATATTTCCATGGGCCTTACAGTCCTGTGTTGATTCCCCCAGGAATGGTTCCTTTTCCGGGTTGGAGTCATTACCCGGCACCTGTCAGTCCAGTAGCCTCTCCAAGTACTCAACCTACTGTTGGATCAGGCCAGATGTATGGGTTAACACCATTATCTCCTTCAGCGCCTGCCTATACAGGACCTTATACACCCTTACCTTCTTCTGTTGGTCCTTCAAGCAGTAGCCAGAAGGAGCAGATATTTCCAGAAAGACCTGGCCAACCTGAATGCCAATATTACATGAGAACAGGGGATTGCAAATTTGGATCCTCATGTAAATATCACCATCCACCAGAATGGGATACACCAAAAACAAATTGTGTCCTTAGTCCGATGGGTCTTCCTCTCCGTCCAGGTGCACCCCAATGCACTCACTATGCACAACGTGGAATATGCAAGTTTGGGCCCACATGCAAATTTGATCACCCAATGGGAACACTGAGTTATAGTCCATCTGCATCATCTCTGGCTGATATGCCAGTTGCTCCCTACCCTGTGGGATCTTCTATGGGTACACTTGCACCATCGTCTTCATCTTCGGATTTGAGGCCAGAACTTATTTCAGGATCTAGCAAGGAATCTCTTTCAACCAGAATGTCATCTTCTATGAGTACATCTAGTGGTTCAGTTGGTTCAATTTTTTCAAAGAGTGGGCCTGGTCATTCTAGTACCCAACAGCCTGTTCAGAGTTCTGGTCCTTCAACTGGCAGCAGTAGTTCGGAAGCTCATACTTCAAGCTAA | 1437 | 50.24 | MDRYGRAPAMEGSPSDPSQEWTGPVAETGLEEPLWQLGLGGGGEAYPERPDEADCIYYLKTGFCGYGARCRFNHPRDRGGVGGTVRPGGGEFPERVGQPVCQFYMKTGTCKFGASCKYHHPRQGGGTVSPVTLNYFGYPLRPGEKECSYYVKTGLCKFGETCKFHHPQPDSIQLSTPGPAALPAPVPAHTLYPTVQSPSVPSSQQYGLVVARPPLLPSSYFHGPYSPVLIPPGMVPFPGWSHYPAPVSPVASPSTQPTVGSGQMYGLTPLSPSAPAYTGPYTPLPSSVGPSSSSQKEQIFPERPGQPECQYYMRTGDCKFGSSCKYHHPPEWDTPKTNCVLSPMGLPLRPGAPQCTHYAQRGICKFGPTCKFDHPMGTLSYSPSASSLADMPVAPYPVGSSMGTLAPSSSSSDLRPELISGSSKESLSTRMSSSMSTSSGSVGSIFSKSGPGHSSTQQPVQSSGPSTGSSSSEAHTSS* | 479 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 3360723 | 3368187 | + | Vvi5g338 | Vvi5g338 | 786480 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi5g338 | 478 | ProSiteProfiles | Zinc finger C3H1-type profile. | 49 | 77 | IPR000571 | GO:0046872 | |
| Vvi5g338 | 478 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
| Vvi5g338 | 478 | ProSiteProfiles | Zinc finger C3H1-type profile. | 95 | 123 | IPR000571 | GO:0046872 | |
| Vvi5g338 | 478 | SMART | c3hfinal6 | 141 | 168 | IPR000571 | GO:0046872 | |
| Vvi5g338 | 478 | SMART | c3hfinal6 | 49 | 76 | IPR000571 | GO:0046872 | |
| Vvi5g338 | 478 | SMART | c3hfinal6 | 95 | 122 | IPR000571 | GO:0046872 | |
| Vvi5g338 | 478 | SMART | c3hfinal6 | 303 | 330 | IPR000571 | GO:0046872 | |
| Vvi5g338 | 478 | SMART | c3hfinal6 | 349 | 376 | IPR000571 | GO:0046872 | |
| Vvi5g338 | 478 | ProSiteProfiles | Zinc finger C3H1-type profile. | 303 | 331 | IPR000571 | GO:0046872 | |
| Vvi5g338 | 478 | Gene3D | - | 301 | 387 | - | - | |
| Vvi5g338 | 478 | Gene3D | - | 47 | 125 | - | - | |
| Vvi5g338 | 478 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 353 | 376 | IPR000571 | GO:0046872 | |
| Vvi5g338 | 478 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 143 | 168 | IPR000571 | GO:0046872 | |
| Vvi5g338 | 478 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 305 | 330 | IPR000571 | GO:0046872 | |
| Vvi5g338 | 478 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 98 | 122 | IPR000571 | GO:0046872 | |
| Vvi5g338 | 478 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 51 | 76 | IPR000571 | GO:0046872 | |
| Vvi5g338 | 478 | SUPERFAMILY | CCCH zinc finger | 98 | 123 | IPR036855 | GO:0046872 | |
| Vvi5g338 | 478 | ProSiteProfiles | Zinc finger C3H1-type profile. | 349 | 377 | IPR000571 | GO:0046872 | |
| Vvi5g338 | 478 | SUPERFAMILY | CCCH zinc finger | 353 | 379 | IPR036855 | GO:0046872 | |
| Vvi5g338 | 478 | SUPERFAMILY | CCCH zinc finger | 307 | 330 | IPR036855 | GO:0046872 | |
| Vvi5g338 | 478 | SUPERFAMILY | CCCH zinc finger | 52 | 77 | IPR036855 | GO:0046872 | |
| Vvi5g338 | 478 | MobiDBLite | consensus disorder prediction | 402 | 478 | - | - | |
| Vvi5g338 | 478 | MobiDBLite | consensus disorder prediction | 276 | 305 | - | - | |
| Vvi5g338 | 478 | PANTHER | PROTEIN PHOSPHATASE RELATED | 12 | 462 | - | - | |
| Vvi5g338 | 478 | Gene3D | - | 127 | 176 | - | - | |
| Vvi5g338 | 478 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 58 | 12 | 462 | - | - | |
| Vvi5g338 | 478 | SUPERFAMILY | CCCH zinc finger | 143 | 170 | IPR036855 | GO:0046872 | |
| Vvi5g338 | 478 | MobiDBLite | consensus disorder prediction | 284 | 300 | - | - | |
| Vvi5g338 | 478 | ProSiteProfiles | Zinc finger C3H1-type profile. | 141 | 169 | IPR000571 | GO:0046872 |
Event-related genes
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 14842 | PF00642 | zf-CCCH | 6.90E-08 | CL0537 | Vvi | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi5g338 | - | - | vvi:100257896 | 889.026 |