Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g339 ATGCGATGTTTTGATCGGGCGAAGATTTATGTAAAGGCTGGGGATGGTGGGAATGGAGTGGTGGCTTTTCGGCGAGAGAAGTATGTGCCGTTTGGGGGGCCTTCGGGTGGGGATGGAGGGAGAGTGCTTTTGGAGTTGTTGCATCCAGGGCAGAGGGCCATGTTGCTGCCTGGTGGAAGGGGTGGGAGAGGCAATGCATCATTTAAGTCAGGGACAAATAAGGTGCCAAAGATTGCAGAGAATGGTGAAGAGGGTCCAGAAATGTGGTTGGAGTTGGAGCTGAAGCTGGTTGCAGATGTTGGAATAGTGGGTGCTCCAAATGCAGGGAAAAGTACACTTCTCAGTGTGATAAGTGCTGCTCAGCCAACAATAGCAAATTATCCATTTACAACCTTACTTCCAAACTTGGGTGTTGTTTCATTTGGTTATGATGCTACAATGGTTGTAGCAGATCTGCCAGGTTTACTTGAAGGAGCACACAAGGGTTTTGGTTTAGGTCATGAGTTTCTTCGGCACACCGAAAGGTGTTCTTCACTGGTACATGTTGTTGATGGTTCCTCACAGCAGCCAGAATATGAGTTTGATGCCGTTCGTCTTGAGCTGGAACTATTTAGTCCTGAACTTGCTGAAAAACCTTACGTAGTTGCTTACAACAAAATGGACCTTCCAGAGGCATATGAGCGGTGGCCATCATTCAAAGAAAGGCTACAAGCTCGTGGGATTGGAACTTTTTGCATGAGTGCGGTGAAAGGAGAGGGCACTCATGAAGTGGTCTGCGCTGCCTATGAGCTTCTAAGAAACAGAACAGAAAGCAATAAAGAAATTGAAGGATGGACAGATCCAGTAAATTTGAACCATGTTGCCGATATGCTACATAAGCAGCGAAGTGCCTCTATTAATGAGTTTGAGATCTTTCATGAGAAAGGTTCCAATACTTGGCATGTAGTTGGATCTGGGTTGCAACGTTTCGTTCAAATGACAAACTGGCGATATATAGAATCTGACAGAAGGTTCCAGCATGTTCTGGAGGCTTGCGGGGTGAACAAGTCTCTCATCAAACTTGGTGTCAAAGAAGGTGACACTGTGATTGTTGGAGAGATGGAGATGGTGTGGCATGATTCCGCTGATAGTAGTGGTCCGTCAAATGTGAGGAAGGAGTCAACAGATTCAGTCAAATGGCCTCAGTGGAAGTAA 1194 46.15 MRCFDRAKIYVKAGDGGNGVVAFRREKYVPFGGPSGGDGGRVLLELLHPGQRAMLLPGGRGGRGNASFKSGTNKVPKIAENGEEGPEMWLELELKLVADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFGYDATMVVADLPGLLEGAHKGFGLGHEFLRHTERCSSLVHVVDGSSQQPEYEFDAVRLELELFSPELAEKPYVVAYNKMDLPEAYERWPSFKERLQARGIGTFCMSAVKGEGTHEVVCAAYELLRNRTESNKEIEGWTDPVNLNHVADMLHKQRSASINEFEIFHEKGSNTWHVVGSGLQRFVQMTNWRYIESDRRFQHVLEACGVNKSLIKLGVKEGDTVIVGEMEMVWHDSADSSGPSNVRKESTDSVKWPQWK* 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3389000 3401752 - Vvi5g339 Vvi5g339 786481

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g339 397 Pfam GTP1/OBG 5 41 IPR006169 -
Vvi5g339 397 Pfam GTP1/OBG 41 96 IPR006169 -
Vvi5g339 397 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 275 IPR027417 -
Vvi5g339 397 Pfam Domain of unknown function (DUF1967) 302 371 IPR015349 GO:0000166
Vvi5g339 397 Gene3D - 303 374 IPR036346 -
Vvi5g339 397 MobiDBLite consensus disorder prediction 375 397 - -
Vvi5g339 397 CDD Obg 98 265 IPR031167 GO:0005525
Vvi5g339 397 Pfam 50S ribosome-binding GTPase 99 219 IPR006073 GO:0005525
Vvi5g339 397 ProSiteProfiles Obg domain profile. 1 97 IPR006169 -
Vvi5g339 397 Gene3D GTP1/OBG domain 42 96 IPR036726 -
Vvi5g339 397 Gene3D GTP1/OBG domain 1 41 IPR036726 -
Vvi5g339 397 ProSiteProfiles Obg C-terminal (OCT) domain profile. 294 373 IPR015349 GO:0000166
Vvi5g339 397 SUPERFAMILY Obg GTP-binding protein N-terminal domain 4 96 IPR036726 -
Vvi5g339 397 SUPERFAMILY Obg GTP-binding protein C-terminal domain 301 373 IPR036346 -
Vvi5g339 397 MobiDBLite consensus disorder prediction 374 397 - -
Vvi5g339 397 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 98 266 IPR031167 GO:0005525
Vvi5g339 397 PANTHER DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED 1 41 IPR045086 GO:0003924|GO:0005525
Vvi5g339 397 PANTHER DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED 41 346 IPR045086 GO:0003924|GO:0005525
Vvi5g339 397 PANTHER MITOCHONDRIAL RIBOSOME-ASSOCIATED GTPASE 2 1 41 - -
Vvi5g339 397 PANTHER MITOCHONDRIAL RIBOSOME-ASSOCIATED GTPASE 2 41 346 - -
Vvi5g339 397 PRINTS GTP1/OBG GTP-binding protein family signature 100 120 IPR006073 GO:0005525
Vvi5g339 397 PRINTS GTP1/OBG GTP-binding protein family signature 121 139 IPR006073 GO:0005525
Vvi5g339 397 PRINTS GTP1/OBG GTP-binding protein family signature 149 164 IPR006073 GO:0005525
Vvi5g339 397 PRINTS GTP1/OBG GTP-binding protein family signature 166 184 IPR006073 GO:0005525
Vvi5g339 397 ProSitePatterns GTP1/OBG family signature. 151 164 IPR006074 GO:0005525
Vvi5g339 397 Gene3D - 97 277 IPR027417 -
Vvi5g339 397 TIGRFAM Obg_CgtA_exten: Obg family GTPase CgtA, C-terminal extension 307 371 IPR015349 GO:0000166
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g339 - - - vvi:100247638 709.138
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g339 . . . . . Bpe14g01139 . . . . Cma06g01481 . Car06g01274 . Sed02g1212 Cpe08g00202 . Bhi01g00970 Tan10g0975 Cmetu10g1427 . Hepe05g1468 . Lcy11g1435 . . . . . . . . . Cone7ag0164 Cone4ag0160 Lsi05g01519 . . Cme06g00707 Blo02g00518 . . Bda13g00170 . . . . . Cmo06g01477 . . . . . . . . . . . . . . Cla05g00630 Cam05g0690 Cec05g0699 Cco05g0696 Clacu05g0684 Cmu05g0652 Cre05g0723 . Csa03g01431 Chy06g00671 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009907 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 33