Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g341 ATGTTGAAGCCGTATGGAGCTATAGTTGGAGGTGCTGCGGGGGTGCTTGCACTAGTGGCAGTAGTTGTTGGATTTGTATGGTTTTGCAAGTTACAGTGTAAAAACTTCTCAAACAAGAACTCAGAGACAGGTTCCTCAGATCCATCTGCACCAGTGGAATGGAATAGGAGAGGTGGACCCAGCTCAGCTGCAGCCCCGCCTCTATCCGGACCACAGGGAGCAAGACAGTTCACAATGGAAGAATTGGAGCAAGCTACCAAGCAATTCAATGAAAGCAATCTAATCGGATATGGAAGCTTTGGTTTGGTTTATAAAGGTTTCCTTTCTGATGGGACTATTGTGGCCATCAAAAGGCGTCCAGGCCCTCCTAGACGGGAATTTGTTGCTGAGGCAACTAATTTGTCAGAGATTCAACACCGTAATCTAGTTACTCTTCTGGGTTACTGCCAGGAAAGTGGATCACAAATGTTAGTTTTTGAATATCTACCCAATGGCAGCATGTGCAATCATTTGTATGATACTGGGCTAGATGCAACAACAAAACTAGAGTTCAAGCGAAGGCTGTCCATAGCTCTAGGGGCAGCCAAAGGTTTACGTCATTTGCATACTCTAAAGCCTCCCTTAGTACACAGGAATTTCAAGACGGCTAATGTCTTGGTTGATGAGAACTTTATTGCCAAGGTTGCAGATACAGGGATTTCACGATTACTTGAAAAAATAGAAGATGCAGGTCCATCTCAAACACCCAGTGTCAATGTTTTCCAACATCCAGAGATAGAAGAATCAAGAACTTTCTCTGAGATAAGTGATGTATACAGCTTTGGAGTTTTCCTCTTGGAGCTTATAACTGGACGGGAGGCCTTATATGATGAGTCCTTTGGATCTGATGAAAGCTTATTTCAATGGGTGGAAACTCGTCTGAGTATAAATGATTTTGTGGACCATCGGCTAGTTGGAAGCTTTACCATGGAGGGAATGAAGGACTTGATCAAGCTTATGTTGCAATGCATGAGTCTTTCAGGAAAATGGCAACTGAAGATTGAAAAAGTTGTGCTTGAGCTTGAAAGGATTCATGAAAAAGAGATGGCTCTGACCACAGGCATGGGCGAGGGCACTACTAAATTTACTTTGGGGAGCCAACTGTTTACTTCAAAATGA 1158 43.35 MLKPYGAIVGGAAGVLALVAVVVGFVWFCKLQCKNFSNKNSETGSSDPSAPVEWNRRGGPSSAAAPPLSGPQGARQFTMEELEQATKQFNESNLIGYGSFGLVYKGFLSDGTIVAIKRRPGPPRREFVAEATNLSEIQHRNLVTLLGYCQESGSQMLVFEYLPNGSMCNHLYDTGLDATTKLEFKRRLSIALGAAKGLRHLHTLKPPLVHRNFKTANVLVDENFIAKVADTGISRLLEKIEDAGPSQTPSVNVFQHPEIEESRTFSEISDVYSFGVFLLELITGREALYDESFGSDESLFQWVETRLSINDFVDHRLVGSFTMEGMKDLIKLMLQCMSLSGKWQLKIEKVVLELERIHEKEMALTTGMGEGTTKFTLGSQLFTSK* 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3423537 3426163 - Vvi5g341 Vvi5g341 786483

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g341 385 ProSiteProfiles Protein kinase domain profile. 89 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g341 385 Pfam Protein tyrosine and serine/threonine kinase 93 337 IPR001245 GO:0004672|GO:0006468
Vvi5g341 385 MobiDBLite consensus disorder prediction 39 73 - -
Vvi5g341 385 ProSitePatterns Protein kinases ATP-binding region signature. 95 117 IPR017441 GO:0005524
Vvi5g341 385 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 2 385 - -
Vvi5g341 385 Gene3D Phosphorylase Kinase; domain 1 63 161 - -
Vvi5g341 385 Gene3D Transferase(Phosphotransferase) domain 1 162 372 - -
Vvi5g341 385 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 2 385 - -
Vvi5g341 385 SUPERFAMILY Protein kinase-like (PK-like) 68 340 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g341 - - - vvi:100264795 720.694
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g341 . . . . . Bpe14g01140 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag0165 Cone4ag0161 . . . . Blo02g00519 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016693 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 6
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76659 PF07714 PK_Tyr_Ser-Thr 3.10E-37 CL0016 Vvi PK