Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g346 ATGTTTGGGTTCTCTCGGAGGCGGATGAAGCTGGGAAGATTGAAAGTTCAGCTTGCAGACTCTGCTCAGGGAACTAGAAGTCCTATAAAACAGTCTAAGCGCACTAGCAATACAAATAATGGAGAATCAGGTGGACGTGCTAGTGGTCAATCCGATGAACTCAACTGTCAGTATTCATCGGATGCGCCTGAGGCGAACAACACTACAACTGGGAAATCTGAGAATTGGATGGTGCTGTCAATTGCTGGGGATAAGCCTACGCCTCGGTTCAATCATGCAGCAGCTGTAATTGGGAACAAGATGGTAGTGGTTGGTGGTGAATCTGAAAATGGATTATTAGAAGATGTACAGGTGCTTAATTTTGATAGATTTACCTGGAGCGCTCCTTCGTCAAAGATTTACTTGTCACCTACCAGTCTACCACTGAAGATCCCTGCATGCAAGGGTCATAGTCTGGTATCTTGGGGCCAGAAGGTTCTCTTAGTTGGAGGAAAAACTGAACCTGGGAGTGAAAGAGTTTCAGTGTGGGCATTTGACATAGAAACAGAGTGTTGGTCACTAATGGAAGCAAAGGGAGACATACCGGTTGCTCGCAGTGGTCACACTGTGGTCAGAGCAAGCTCTGTCTTAATCCTATTTGGGGGTGAAGATTCTAAAAGAAGGAAACTCAATGATCTACATATGTTTGATCTAAAGTCTTTGACATGGCTCCCTCTTCATTGCACAGGAACGGGGCCCTCCCCAAGATCCAATCATGTGGCAGCTCTCTATGATGATAAAATTCTTTTTATTTTCGGAGGAGGATCAAAATCTAGGACTCTGAATGACTTGTACTCTCTTGACTTTGAAACGATGATATGGTCAAGAATTAAGAAGAAACGAGGATTTCCATCACCTAGAGCTGGTTGTTGTGGAGTTTTATGTGGAACTAAATGGTATATAGCAGGGGGTGGAAGCAGGAAAAAACGACATGCAGAGACCTTGATCTATGATGTGTTAAAAGTGGAGTGGTCTGTTATTGCAGGACCAACTTCTTCTATTACCACCAACAAGGGATTCAGCCTAGTGCTTGTGCAGCACAAAGAAAAGGATTTCCTTGTTGCATTTGGGGGAACCAAAAAGGAGCCATCAAATGAGGTTGAAGTATTAATCAAGGAAAAGAATGAAGTATCCATAAGTCGGCGGTCTACCCTGAATAAAGGTTCAGAACTTTTTCTGTCTGAGAATCGTTCATCATCTGCAGGATTGGCTTCTCAACTCAGTAATGGTGCTCCCCAGCATCCAGTTGAATCTGTTATGAGGCAAAATCTAGCATCTGCGATTGAACAGCATGGCTCTGGTAGGAAATCTCTGTCAGAGTCCTCACTTGTTGATCCAAATCCTGCTCCTGGCAATGTTTCACTCCGCAAGCAATTTCATAATGAGGAAGAGTATAACACAGCTGTTAAGACATTAAGGAGTCTAGAAGATGAATGTTATTCTTCACAGGCAAGTGAACACAGAATGAAATTGTTTGATACTGGAATCCATGGTAGCCTTGCTGGATGTAAAATCAACGTGGACGAGATTCCTTCTGTATTGGACTCAGAAAACTCAAATGCATACAACCAAGGAAATGGGAACCTCCTAGTTGATAATGATGATGAAGTATTCCCAGAAAGTCATGGTAAATCAGTAGCATTTTCGGCACCATCAAGCATATATCAATTGTATGAAACAAAAATGGCTGCCCTAATAAGAAAGAATGGAATTTTAGAAGGACAGTTAACAGCTGCATTGGCAAGCAGAGAAGCTGTGGAGAAAAATTTATCCTCTGTTCTTAAAAATAGACAGGAAATGGAGAAAAAACTGGCTGACACATTGAAGGAAATGGAGATGCTGAAAGAGAAGTTGGCAGGTGTAGAGCTAGCACAAGAAGAGGCCAACAACCTGTCCAACATGGTCCACTCTGACAATGTAAGGCTTGAACATGATGTGGCTTTCCTTAAGGCGGTTTTAGATGATACCCAAAAGGAGCTTCATTCAACTAGAGGAGTGCTTGCAGGAGAGAGGGCAAGAGCATTCCAACTGCAGGTTGAAGTTTTCCATCTCAAACAAAGGTTGCAGTCCATGGAGAATCGAGCGCCAACTCCCAGGAAACCTTTCCACGTGTAG 2154 43.08 MFGFSRRRMKLGRLKVQLADSAQGTRSPIKQSKRTSNTNNGESGGRASGQSDELNCQYSSDAPEANNTTTGKSENWMVLSIAGDKPTPRFNHAAAVIGNKMVVVGGESENGLLEDVQVLNFDRFTWSAPSSKIYLSPTSLPLKIPACKGHSLVSWGQKVLLVGGKTEPGSERVSVWAFDIETECWSLMEAKGDIPVARSGHTVVRASSVLILFGGEDSKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKILFIFGGGSKSRTLNDLYSLDFETMIWSRIKKKRGFPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIYDVLKVEWSVIAGPTSSITTNKGFSLVLVQHKEKDFLVAFGGTKKEPSNEVEVLIKEKNEVSISRRSTLNKGSELFLSENRSSSAGLASQLSNGAPQHPVESVMRQNLASAIEQHGSGRKSLSESSLVDPNPAPGNVSLRKQFHNEEEYNTAVKTLRSLEDECYSSQASEHRMKLFDTGIHGSLAGCKINVDEIPSVLDSENSNAYNQGNGNLLVDNDDEVFPESHGKSVAFSAPSSIYQLYETKMAALIRKNGILEGQLTAALASREAVEKNLSSVLKNRQEMEKKLADTLKEMEMLKEKLAGVELAQEEANNLSNMVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSMENRAPTPRKPFHV* 718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3456993 3469069 - Vvi5g346 Vvi5g346 786488

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g346 717 MobiDBLite consensus disorder prediction 441 461 - -
Vvi5g346 717 SUPERFAMILY Kelch motif 73 341 IPR015915 GO:0005515
Vvi5g346 717 MobiDBLite consensus disorder prediction 441 467 - -
Vvi5g346 717 MobiDBLite consensus disorder prediction 20 71 - -
Vvi5g346 717 Coils Coil 652 672 - -
Vvi5g346 717 Pfam Galactose oxidase, central domain 248 296 - -
Vvi5g346 717 Pfam Galactose oxidase, central domain 197 247 - -
Vvi5g346 717 PANTHER GALACTOSE OXIDASE/KELCH REPEAT SUPERFAMILY PROTEIN 1 716 - -
Vvi5g346 717 PANTHER ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 5 1 716 - -
Vvi5g346 717 SUPERFAMILY Tropomyosin 572 707 - -
Vvi5g346 717 MobiDBLite consensus disorder prediction 16 71 - -
Vvi5g346 717 Pfam Kelch motif 88 128 IPR006652 GO:0005515
Vvi5g346 717 Gene3D - 174 412 IPR015915 GO:0005515
Vvi5g346 717 Gene3D - 44 173 IPR015915 GO:0005515
Vvi5g346 717 Coils Coil 596 644 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g346 - - - vvi:100264848 1423.68
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi5g346 Vvi14g201 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g346 . . . . . Bpe14g01142 . . . . Cma06g01478 Cma14g01635 Car06g01272 Car14g01462 Sed02g1213 Cpe08g00204 Cpe03g01377 Bhi01g00968 Tan10g0971 Cmetu06g2006 . Hepe05g1470 . Lcy11g1437 . . . . . . . . . Cone7ag0168 Cone4ag0165 Lsi05g01515 . . Cme06g00705 Blo02g00587 . . Bda13g00168 . . . . . Cmo06g01475 Cmo14g01674 . . . . . . . . . . . . . Cla05g00628 Cam05g0688 Cec05g0697 Cco05g0694 Clacu05g0682 Cmu05g0650 Cre05g0721 . Csa03g01429 Chy06g00669 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007218 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 37