Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g349 ATGGGTGGGTGTTTTCCTTGTTTCGGATCATCCAACAAGGAGGGTAATGGAGTGAAGAAAGATGTGGCCAAGAAGGATTCAGTTAAGGACGGCTCATCTGCTCAGTCTCATCATGTGACCAGAGTTAGTTCAGACAAATCAAAATCTCGGAGCGGTTCTGATTCTAAGAAGGAACCTGCAGTTCCAAAAGATGGACCAACAGCACATATTGCTGCACAAACATTTACGTTTCGGGAGCTTGCTGCTGCCACAAAGAACTTCAGGCCAGAGTCTCTGCTGGGTGAAGGAGGGTTTGGGCGTGTTTACAAAGGTCGCTTAGAGAGCACTGGACAAGTAGTTGCTGTGAAACAACTTGACCGAAATGGCCTTCAAGGAAATAGAGAATTCTTGGTGGAGGTTCTCATGCTTAGCCTCTTACATCACCCAAACCTTGTTAACTTGATTGGTTATTGTGCTGATGGGGACCAACGTCTGCTTGTCTATGAGTTTATGCCATTGGGATCATTGGAGGATCATTTACATGATCTTCCACCAGACAAGGAGCCTCTGGACTGGAACACAAGGATGAAGATTGCTGCTGGTGCAGCTAAAGGTTTGGAGTATTTGCATGATAAAGCAAGCCCTCCTGTCATATACAGGGATTTAAAATCCTCCAACATCCTTCTTGATGAGGGATATCATCCTAAATTATCAGATTTTGGGCTTGCAAAGCTGGGACCTGTTGGTGATAAGACTCATGTCTCCACAAGGGTGATGGGGACGTATGGTTATTGCGCTCCTGAATATGCTATGACTGGCCAACTTACTCTGAAGTCTGATGTTTATAGTTTTGGTGTCGTTTTCCTTGAACTTATCACAGGGCGTAAAGCTATTGATAACAATCGGGCTGCTGGTGAGCATAACCTTGTTGCATGGGCACGACCACTTTTCAAGGACCGTAGGAAGTTCCCTAAGATGGCTGATCCACTACTGCAAGGCCGTTATCCAATGCGAGGACTTTACCAAGCTCTAGCAGTCGCAGCCATGTGTTTGCAAGAACAAGCAGCTACAAGACCTCTAATAGGGGATGTTGTGACTGCGCTCACATATTTAGCCTCCCAAACTTACGACCCAAATGCAGCCTCTGCTCAGAGTAATAGAGTTGGTCCCTCTACTCCTAGGAGCAAGGATGACAGGAGGAGCCTACCAGATGGATTGGATAGCCCAGATAATCCTGGACGTGGTGGCCGACTTGGCTCCCCTTCCACTCATAAGAATTCACCTGATTTCAGGAGGAGAGATCCTCTAAGGGATTTGAGCACTGCCACAGACTTAGGCAGGAGTGAAGCTGATGGTGGGTCTGGGAGGAAATGGGGCTTGGATGAATTAGAGCGACAGGAATCTCAGAGAGACATCCCCATAAAAATCGGGATTTAG 1416 46.89 MGGCFPCFGSSNKEGNGVKKDVAKKDSVKDGSSAQSHHVTRVSSDKSKSRSGSDSKKEPAVPKDGPTAHIAAQTFTFRELAAATKNFRPESLLGEGGFGRVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKASPPVIYRDLKSSNILLDEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNNRAAGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQTYDPNAASAQSNRVGPSTPRSKDDRRSLPDGLDSPDNPGRGGRLGSPSTHKNSPDFRRRDPLRDLSTATDLGRSEADGGSGRKWGLDELERQESQRDIPIKIGI* 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3485751 3493842 + Vvi5g349 Vvi5g349 786491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g349 471 ProSiteProfiles Protein kinase domain profile. 87 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g349 471 MobiDBLite consensus disorder prediction 41 63 - -
Vvi5g349 471 MobiDBLite consensus disorder prediction 373 471 - -
Vvi5g349 471 SMART serkin_6 87 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g349 471 CDD STKc_IRAK 93 362 - -
Vvi5g349 471 SUPERFAMILY Protein kinase-like (PK-like) 69 361 IPR011009 -
Vvi5g349 471 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL27 1 426 - -
Vvi5g349 471 Gene3D Transferase(Phosphotransferase) domain 1 164 382 - -
Vvi5g349 471 PANTHER OS07G0668900 PROTEIN 1 426 - -
Vvi5g349 471 MobiDBLite consensus disorder prediction 1 68 - -
Vvi5g349 471 MobiDBLite consensus disorder prediction 443 464 - -
Vvi5g349 471 Gene3D Phosphorylase Kinase; domain 1 71 163 - -
Vvi5g349 471 Pfam Protein kinase domain 90 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g349 471 ProSitePatterns Protein kinases ATP-binding region signature. 93 116 IPR017441 GO:0005524
Vvi5g349 471 MobiDBLite consensus disorder prediction 419 433 - -
Vvi5g349 471 MobiDBLite consensus disorder prediction 17 32 - -
Vvi5g349 471 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi5g349 Vvi7g404 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76660 PF00069 Pkinase 2.30E-46 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g349 - - vvi:100249446 920.228