Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g35 ATGGATGCACTTGTACGGACGCCACATATTACGACAAATCTCACTCCAAAGCTCATTAGACTGGTGGGCAATGGAGGGATTACATGGAACCAAACCCCTTTTTTGACATTCTCAAAAGGGTACTCTTCAATTTCTGCAAATAGGCTAAGAAAATCAGTGGTTGCTGAGGCAAAGAAGAGGAAGAAAGACAGCGTCGATGCCCACAACTTCGTCCCCAAACCAGATGAAGCCACCGGCGTTTTCCCTGAAGCTGTGCTGCTCAAAGAGAAGAAAGCTCAGGAAGATGGTAGTTTTCTCCCAGAGTTTGCAGATGCTGAAGAAGAAGAACTTTATGAATTTCTGAATCTTCAGCTGGAAAGTGATTTGAATGTGGAACGAATGCGCCACTATGAAGTGGTTTATTTAATACATGAGAAGCATGATGAGGAGGTTGAGAATGTCAATTCCAAAGTGCAAGATTTTATAAGGGAGAAAAAGGGTAAGCTTTGGCGACTGAACGATTGGGGTCTTCGAAGACTAGCGTACAAGATACAGAAAGCAAAGAATGCCCACTACATCTTGATGAACTTCGAGCTGGAAGCCCAATGGATTAATGATTTCAAGACCATGCTAGACCAAGACGAAAGAGTCATCCGGCACCTTGTAATAAAGAGAGACGAGGCAATCACAGAGGACTGCCCCCCTCCTCCTGAGTTCCACACTCTTCGAGCAGGTACCGATGATTATGATGACGAGGAGGATGATGTAGACTATGATGATGAAGATGATTGGGATGGTGAGGGTGAGGTGGACTCAAACAGCTACAGTGATGATGTCGTAGATGTTATTGTTCCTGTCAACAGTGATGATAGAGAAGATAAGAATGTTGGAAGGAGAAACTTGAGAGCTGAGAAAGTAGGTAGGTAG 906 44.15 MDALVRTPHITTNLTPKLIRLVGNGGITWNQTPFLTFSKGYSSISANRLRKSVVAEAKKRKKDSVDAHNFVPKPDEATGVFPEAVLLKEKKAQEDGSFLPEFADAEEEELYEFLNLQLESDLNVERMRHYEVVYLIHEKHDEEVENVNSKVQDFIREKKGKLWRLNDWGLRRLAYKIQKAKNAHYILMNFELEAQWINDFKTMLDQDERVIRHLVIKRDEAITEDCPPPPEFHTLRAGTDDYDDEEDDVDYDDEDDWDGEGEVDSNSYSDDVVDVIVPVNSDDREDKNVGRRNLRAEKVGR* 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 397743 400384 + Vvi5g35 Vvi5g35 786177

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g35 301 PANTHER MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6 90 241 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Vvi5g35 301 CDD bS6 129 218 IPR020814 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Vvi5g35 301 Hamap 30S ribosomal protein S6 [rpsF]. 127 220 IPR020814 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Vvi5g35 301 MobiDBLite consensus disorder prediction 241 267 - -
Vvi5g35 301 PANTHER 28S RIBOSOMAL PROTEIN S6, MITOCHONDRIAL 90 241 - -
Vvi5g35 301 Gene3D - 122 225 IPR014717 -
Vvi5g35 301 MobiDBLite consensus disorder prediction 223 301 - -
Vvi5g35 301 Pfam Ribosomal protein S6 129 217 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Vvi5g35 301 TIGRFAM S6: ribosomal protein bS6 127 219 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Vvi5g35 301 Coils Coil 137 157 - -
Vvi5g35 301 MobiDBLite consensus disorder prediction 277 301 - -
Vvi5g35 301 SUPERFAMILY Ribosomal protein S6 127 227 IPR035980 GO:0003735|GO:0005840|GO:0006412|GO:0019843
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g35 - - - vvi:100243195 540.421
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g35 . . Bda03g01193 . . . Bma04g01115 . . Cmo17g00373 . . . . . . . . . . . . . . Cla06g00412 . Cec06g0441 Cco06g0440 Clacu06g0422 Cmu06g0421 . . Cone15ag0715 . . . Csa06g01854 Chy11g01587 . . . . . . . . . Sed05g1232 . . . Cma17g00384 . . Cpe12g00335 . Bhi12g01952 Tan06g2784 Cmetu11g0368 . . . Lcy12g0869 . . . . . . . Lsi09g01509 . . Cme11g02096
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011574 3 1 1 1 0 1 0 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 0 1 30