Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g350 ATGGCGAAACCCTCGAAATCGCAGGTTTCATCCGATGAGGCCTTATCGAATGGCTCAAACTCCTCCGAGGAAGAGCAACTGAACGATCAGATCAACGACGAAGAGGACGAGGAGGAGCTTGAAGCGGTCACGAGGACTGCCGTCTCTGAGGACGAGGATGAAGAAGCCGCTGACGGGGGCAACTCGCCTGCCACAGAAGACGATGCTGCCGGCGATAGCAGCGACGGCGAGGAAGACGAGGAGGATGGAAATGCTGTGGGTGGCACTGAAATTAGCAAGCGTGAAAAGGCCAGGCTTAAAGAAATGCAGAAGATGAAGAAACAGAAGATCCAGGAAATATTGGATGCTCAAAATGCTGCTATTGATGCCGATATGAACAATAGAGGGAAGGGACGCTTGAAGTATCTCTTGCAGCAGACAGAGATTTTTGCTCATTTTGCCAAGGGTGATCAATCCACATCTCAGAAAAAGACAAAGGGAAGGGGTCGCCATGCATCAAAAGTGACTGAAGAGGAAGAAGATGAAGAGTGCCTGAAAGAGGAAGAAGATGGTTTATCTGGGACAGGAAACACGCGGCTGGTGACACAGCCCTCATGTATTCAGGGAAAGATGAGAGATTACCAACTTGCTGGCCTAAACTGGCTCATACGGCTGTATGAGAATGGCATCAATGGAATCCTCGCAGATGAAATGGGTCTGGGTAAAACATTGCAAACCATTTCTTTATTGGGTTATCTGCATGAGTTTAGAGGAATAACTGGTCCCCACATGGTTGTTGCCCCAAAATCGACTCTTGGCAACTGGATGAATGAAATTCGACGTTTTTGTCCAGTTCTGCGTGCTGTGAAGTTTCTTGGAAATCCTGATGAAAGGAGGCATATACGTGACAATTTACTGGTTGCTGGGAAATTTGATGTCTGTGTCACTAGTTTCGAGATGGCCATCAAAGAGAAAACTACATTGCGACGCTTTAGTTGGCGCTATATCATCATTGATGAAGCTCATCGAATCAAGAATGAGAATTCTCTTCTTTCAAAGACAATGAGACTATATAGTACGAACTACCGCCTTCTTATCACGGGTACACCACTTCAGAACAATCTTCATGAACTATGGTCTCTTCTCAACTTTCTACTGCCCGAGATATTTAATTCAGCTGAGACTTTTGATGAATGGTTCCAAATTTCTGGAGATAATGACCAGCAGGAGGTTGTTCAACAGCTTCATAAGGTCCTCCGGCCTTTCCTCCTTCGGAGACTGAAGTCAGATGTTGAGAAAGGCTTGCCTCCAAAAAAGGAAACAATACTTAAAGTAGGCATGTCTCAATTGCAGAAACAGTTCTACAGGGCTTTACTACAAAAAGACCTTGAAGTTGTTAATGCTGGTGGAGAACGCAAACGTCTTTTGAATATTGCAATGCAACTGCGTAAATGCTGCAATCACCCATATCTTTTCCAAGGTGCTGAACCTGGACCTCCTTATACGACAGGAGAGCACCTTATTACGAATTCTGGTAAGATGGTTCTTTTGGATAAGCTACTTCCAAAGCTAAAAGAGCGTGATTCTAGGGTTCTAATATTTTCACAGATGACAAGGTTGCTGGACATTCTTGAAGATTACTTGATGTTTCGAGGATACCTGTATTGTCGAATTGATGGAAATACAGGGGGAGAAGATCGTGATGCCTCCATTGATGCATTTAATAAACCCGGAAGTGAGAAATTTGTGTTCTTACTGTCAACTAGAGCTGGAGGTCTTGGTATCAATCTTGCTACTGCAGATGTTGTCATCCTTTATGACAGTGACTGGAACCCCCAAGTTGATTTGCAAGCACAAGATCGTGCTCATCGGATTGGTCAAAAGAAAGAAGTTCAAGTGTTTCGATTCTGCACAGAGTATACCATCGAGGAAAAGGTGATTGAGAGAGCTTATAAAAAATTGGCACTCGATGCTTTGGTGATTCAACAAGGACGGTTAGCAGAGCAGAAAACTGTGAACAAAGATGAGCTACTGCAAATGGTCAGGTTTGGTGCTGAAATGGTTTTCAGCTCCAAGGATAGCACAATTACGGATGAAGACATAGACAGGATCATTGCTAAAGGAGAAGAGGCAACAGCTGAGCTTGATGCTAAGATGAAGAAATTTACAGAAGATGCCATCAAATTTAAAATGGATGATACTGCTGAGTTGTATGATTTTGATGATGAAAAGGATGAGAACAAGTTTGACTTCAAGAAAATTGTCAGTGAAAACTGGATTGAGCCACCAAAAAGAGAGCGGAAGCGGAATTACTCAGAGTCTGAATACTTTAAGCAAACAATGCGGCAAGGTGCTCCAGCAAAACAAAGAGAGCCTAGAATACCGCGCATGCCCCAGCTGCATGATTTCCAATTCTTTAACACACAAAGGCTGAATGAGTTGTATGAGAAAGAAGTGCGGTACCTCATGCAAACACATCAAAAGAATCAGTTAAAAGACTCCATAGATGTGGATGAACCTGAAGACTTGGGAGATCCCTTGACTGCCGAGGAGCAGGAAGAAAAGGAGAGATTATTAGAAGAGGGATTTTCATCATGGAGTAGAAGAGATTTCAATACTTTCATTAGGGCTTGTGAGAAGTATGGCCGGAATGATGTAAAAAGTATTGCTTCTGAAATGGAAGGGAAGACAGAGGAGGAAGTTGAGAGATATGCAAAAGCCTTCAAAGAAAGATACAAAGAATTAAATGATTATGATAGGATCATCAAGAACATTGAAAGAGGAGAGGCTAGAATTTCTAGGAAAGATGAGATCATGAAAGCAATTGGGAAGAAGTTGGATCGCTACAAGAATCCATGGCTGGAACTAAAGATCCAGTATGGGCAAAACAAAGGGAAGTTGTACAATGAAGAATGCGATCGTTTTATGATATGCATGGTTCACAAACTTGGATATGGGAACTGGGATGAGCTGAAGGCAGCATTTCGCACTTCTCCCTTGTTTCGTTTTGATTGGTTTGTAAAGTCTCGCACAACCCAAGAGCTTGCAAGAAGATGTGATACCCTCATTCGATTAGTGGAGAGGGAAAATCAAGAATTTGATGAGAGGGAGAGACAGGCACGGAAAGAGAAGAAGCTTGCCAAGAATATGACACCATCAAAGCGTGCCATGGCAAGGCAGGCAACTGAGAGCCCGACCTCTGTAAAGAAACGGAAACAACTGTTGATGGATGACTACGTGAGCTCGGGCAAGAGGAGGAAATGA 3243 43.32 MAKPSKSQVSSDEALSNGSNSSEEEQLNDQINDEEDEEELEAVTRTAVSEDEDEEAADGGNSPATEDDAAGDSSDGEEDEEDGNAVGGTEISKREKARLKEMQKMKKQKIQEILDAQNAAIDADMNNRGKGRLKYLLQQTEIFAHFAKGDQSTSQKKTKGRGRHASKVTEEEEDEECLKEEEDGLSGTGNTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPDERRHIRDNLLVAGKFDVCVTSFEMAIKEKTTLRRFSWRYIIIDEAHRIKNENSLLSKTMRLYSTNYRLLITGTPLQNNLHELWSLLNFLLPEIFNSAETFDEWFQISGDNDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQLQKQFYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLITNSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYLYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDEKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGAPAKQREPRIPRMPQLHDFQFFNTQRLNELYEKEVRYLMQTHQKNQLKDSIDVDEPEDLGDPLTAEEQEEKERLLEEGFSSWSRRDFNTFIRACEKYGRNDVKSIASEMEGKTEEEVERYAKAFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLVERENQEFDERERQARKEKKLAKNMTPSKRAMARQATESPTSVKKRKQLLMDDYVSSGKRRK* 1081
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3495044 3504373 - Vvi5g350 Vvi5g350 786492

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g350 1080 Gene3D - 425 717 IPR027417 -
Vvi5g350 1080 Gene3D - 943 1046 - -
Vvi5g350 1080 Coils Coil 92 119 - -
Vvi5g350 1080 MobiDBLite consensus disorder prediction 86 103 - -
Vvi5g350 1080 CDD SANT 858 902 IPR001005 -
Vvi5g350 1080 Pfam SNF2-related domain 217 484 IPR000330 GO:0005524|GO:0140658
Vvi5g350 1080 Gene3D ISWI, HAND domain 756 854 IPR036306 GO:0003677|GO:0006338|GO:0031491
Vvi5g350 1080 SMART helicmild6 535 619 IPR001650 -
Vvi5g350 1080 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 421 702 IPR027417 -
Vvi5g350 1080 Pfam HAND 768 850 IPR015194 GO:0003677|GO:0006338|GO:0031491
Vvi5g350 1080 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 216 381 IPR014001 -
Vvi5g350 1080 MobiDBLite consensus disorder prediction 148 192 - -
Vvi5g350 1080 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 419 IPR027417 -
Vvi5g350 1080 SMART ultradead3 200 392 IPR014001 -
Vvi5g350 1080 MobiDBLite consensus disorder prediction 1 26 - -
Vvi5g350 1080 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 509 660 IPR001650 -
Vvi5g350 1080 SMART sant 957 1018 IPR001005 -
Vvi5g350 1080 SMART sant 855 904 IPR001005 -
Vvi5g350 1080 MobiDBLite consensus disorder prediction 70 85 - -
Vvi5g350 1080 CDD SF2_C_SNF 504 630 - -
Vvi5g350 1080 SUPERFAMILY Homeodomain-like 910 1032 IPR009057 -
Vvi5g350 1080 Coils Coil 1016 1039 - -
Vvi5g350 1080 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 767 857 IPR036306 GO:0003677|GO:0006338|GO:0031491
Vvi5g350 1080 MobiDBLite consensus disorder prediction 823 844 - -
Vvi5g350 1080 PANTHER SNF2/RAD54 HELICASE FAMILY 9 1080 - -
Vvi5g350 1080 Gene3D - 855 909 - -
Vvi5g350 1080 MobiDBLite consensus disorder prediction 1048 1062 - -
Vvi5g350 1080 Pfam SLIDE 912 1022 IPR015195 GO:0003677|GO:0005634|GO:0006338
Vvi5g350 1080 CDD DEXHc_SMARCA1_SMARCA5 201 421 IPR044754 GO:0005524
Vvi5g350 1080 MobiDBLite consensus disorder prediction 27 41 - -
Vvi5g350 1080 Pfam Helicase conserved C-terminal domain 507 619 IPR001650 -
Vvi5g350 1080 MobiDBLite consensus disorder prediction 1029 1043 - -
Vvi5g350 1080 SUPERFAMILY Homeodomain-like 858 908 IPR009057 -
Vvi5g350 1080 Gene3D iswi atpase 910 942 - -
Vvi5g350 1080 Gene3D - 205 420 IPR038718 -
Vvi5g350 1080 MobiDBLite consensus disorder prediction 1 103 - -
Vvi5g350 1080 MobiDBLite consensus disorder prediction 1029 1063 - -
Vvi5g350 1080 ProSiteProfiles SANT domain profile. 854 906 IPR017884 -
Vvi5g350 1080 PANTHER REMODELING FACTOR, PUTATIVE-RELATED 9 1080 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g350 K11654 SMARCA5, SNF2H, ISWI; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] - vvi:100244281 2039.23
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi5g350 Vvi7g354 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g350 . . . Bda08g00281 . . . Bma05g01060 Cmo08g01181 . . . . . . . . . . . . . . . Cla06g00499 Cam06g0536 Cec06g0536 Cco06g0540 Clacu06g0521 Cmu06g0523 Cre06g1293 . . . . . . Chy11g01479 . . . . . Bpe05g00850 . . . Sed09g0640 . . Cma08g01207 . Car08g01083 . . Cpe17g00005 Bhi12g02092 Tan06g2636 Cmetu11g0294 Lac12g2383 . . . . . . . . . . Lsi09g01406 . . Cme11g01986
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009268 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14843 PF00176 SNF2_N 3.80E-71 CL0023 Vvi TR