Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g357 ATGTATAAGAACCAGTTGCAAGAATTAGCGCAGAGAAGCTGCTTCAACTTGCCATCCTATGCCTGCATTAGGGAAGGACCAGATCATGCCCCACGCTTTAAAGCCACAGTTAACTTCAACGGTGAAGTCTTTGAGAGTCCAACCTTCTGCAATACTTTGAGACAAGCTGAACATGCAGCAGCAGAGGTAGCACTTAATGTGCTTTCAAAAAATGGCCCTTCTAAAGCACTGGCTGCAAAAGTTCTGGATGAAACTGGAGTTTACAAGAACTTGCTTCAAGAGACAGCTCACAGAGCTGGGTTGAAACTTCCTGTTTATACCACTGTTCGATCTGGACCAGGCCATATTCCTGTTTTCTTTTGCACAGTGGATATTGCAAAAATGAGCTTTACAGGAGAACCAGCCAAAACCAAAAAGCAAGCTCAGAAAAATGCAGCAATGGCTGCTTGGTCTGCCTTGAAACGATTGTCTCAGGCCAGCTCTTCCACTTCTTCCGCTCCTTTAGAGTCTGGAGGGAATGATGAACTGGAGCAAGTCACTGTTGCCCGCTATCTTGCTAGTTTACAACCACCAGAGGCGAACAAGTCTGCACAAAGAGACGGGCTACTAGGACAGGGTTCTACACCTTGTAGGAGGGACTTGATGCCAAATGACAATGCCATATCATTGTACTCTATGCACTGCAGGGACTGGTCTCATTCTGCTCCTCTTATTCAATTGGCACATCAATCTTGGCCCAAAGAGAGGGCATCCCAGCAGCAGAACCACCTGTTGGCTCTTCCATCTGCACCAACCACTCTCCCCAGACCTCAGATGTCTCCAATTATTCGGTCCATATTCCAGCCAGACCATGGGCCATGTTTCTTACCAAGGGAGCAAGAGCCAGCCCCTCTTAGTCCTGGAATTGGTCCATTTCTTTATTTCTCAAATGGTTCAATGCCAGTCCCTGTTAGTAATCTCTCCCAAGTTACCATTCAAGAGATAGAGGAAAAACCCAAAGTGGAACAGGAGTGGCTGAATGTTGATGCAAATTCCGGCTGCTGGAAAATTAATTTCCCCTCCAATTTATCTGGGCTCTCTCTAGTTGAAATTCCAAAGTGTCCCATTTCTCCTAACAGTCATTCTGAACCTATCCAGGAGGCGCTGCAGGGAAAAGAAGAGGAAAACAGTGCTGGAAACTCTGCTCAATTAGGAACCAACCAAATCCAACGACTTGCTTGGACATCTCCCAGGTTTGCGGATACCAGGTCCAGTGCAGGAGCCTCGGATGAAGCTAATCTGTGGTTACAAAACCAGCAATTCTTGGACTATTTGCAGTCAAATATCAGATCCCAAAATGCCCCCATGGCTACTTACCCAGGATCATCCAGAGTTTATACACGACCTTCTGCAGCTCCTGTGACGATCAGAAGCAGTGATGCATCATCCATCCGAAAGCCCAGACCAATGAGTTCGAGCTTATTCGTATCAGCTCCACCACCAACCAGGTACGCGGCTCCTACTTGGTCAACAAGGCCAACGCTAGAAGGAGCGAAGTACACTGGAGTGAGGCCTTGTAGTAGGTTCATGGCACCAGCGGTTAACATCCGATCAGTTGTGCCAGTGTGCTCAGCTCCTCCTGCTAAAGACAGGGCAGGAGGCAGCCAGGAGGAGAGAGCTGGAAGGCTACAAGTTCAGAAGTTGGGAAGGCTGATCCCTTCTTCATTTTCAAACCCTAAACAAGGGCTGAGTCCCAAAAGCATGAACCAGTGGAATCGGATCCACAACTCACTTCCCTACGATATTGCCCTCAAAATTGCATCATCCCTCCAGGCATCGGATCTATGTTCTCTGGGAAGTTGCTCTAGGTCTTGGCGGGAACTATGGGGGTCGGATCCTATATGGGAGCGTCTGTGCAGAGATAGATGGTCTGTCCAGTGTATGTTAGGAGAATCCTCAGCCTCGGAGCTTCACCCCCCTAAAGAGGGATGGAAGAGCTTTTACATCAAGTGGCACCATGAGATGGCCGGTAGAGCTACTGATGTTGTTAGGTTTGTGGAAAGTCGTTCCTCCTCTGAATCACTTGAGGTTGGAGATCATCTGAAAGCAATTGTGGGCCTGAGAGATAGGCAGCTTGGATTTAAAGATGTTCAAATATTCCTTTTCAAACCAAAGCTTAATGTGCTGATTAACTTGGTTGGCCTGCAATATTGCATTCAATGGCTTAAAGTGCCGGCTGAGCATGTCATGGAAGCAATTCAAAGCTGCAAGATTTCAGAGCGGCAAGTCTGCGTGAAATGGTGGAAGCTAGGGAGGTGGTTTTATGGATTCCGCTTGCGGGACGAATCTCATTGTCGCCGTGTCTCTTTGAGGGACGTTGCAAAAGAGGATGAGGTACTTTGGGTGCTTCACCGAGGAGCTATTCATGAGGTTTTGCGCGTTCAGATCTCTATCCCTAGTCCCTCAACAACTTCCTGGTCATGTCAAAGCTCCCAAACATGA 2481 47.76 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEVFESPTFCNTLRQAEHAAAEVALNVLSKNGPSKALAAKVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHIPVFFCTVDIAKMSFTGEPAKTKKQAQKNAAMAAWSALKRLSQASSSTSSAPLESGGNDELEQVTVARYLASLQPPEANKSAQRDGLLGQGSTPCRRDLMPNDNAISLYSMHCRDWSHSAPLIQLAHQSWPKERASQQQNHLLALPSAPTTLPRPQMSPIIRSIFQPDHGPCFLPREQEPAPLSPGIGPFLYFSNGSMPVPVSNLSQVTIQEIEEKPKVEQEWLNVDANSGCWKINFPSNLSGLSLVEIPKCPISPNSHSEPIQEALQGKEEENSAGNSAQLGTNQIQRLAWTSPRFADTRSSAGASDEANLWLQNQQFLDYLQSNIRSQNAPMATYPGSSRVYTRPSAAPVTIRSSDASSIRKPRPMSSSLFVSAPPPTRYAAPTWSTRPTLEGAKYTGVRPCSRFMAPAVNIRSVVPVCSAPPAKDRAGGSQEERAGRLQVQKLGRLIPSSFSNPKQGLSPKSMNQWNRIHNSLPYDIALKIASSLQASDLCSLGSCSRSWRELWGSDPIWERLCRDRWSVQCMLGESSASELHPPKEGWKSFYIKWHHEMAGRATDVVRFVESRSSSESLEVGDHLKAIVGLRDRQLGFKDVQIFLFKPKLNVLINLVGLQYCIQWLKVPAEHVMEAIQSCKISERQVCVKWWKLGRWFYGFRLRDESHCRRVSLRDVAKEDEVLWVLHRGAIHEVLRVQISIPSPSTTSWSCQSSQT* 827
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3561839 3569669 + Vvi5g357 Vvi5g357 786499

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g357 826 MobiDBLite consensus disorder prediction 189 210 - -
Vvi5g357 826 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1 70 IPR014720 -
Vvi5g357 826 ProSiteProfiles F-box domain profile. 585 631 IPR001810 GO:0005515
Vvi5g357 826 SUPERFAMILY dsRNA-binding domain-like 88 161 - -
Vvi5g357 826 Gene3D - 84 154 - -
Vvi5g357 826 MobiDBLite consensus disorder prediction 470 489 - -
Vvi5g357 826 Gene3D - 2 83 - -
Vvi5g357 826 Pfam Double-stranded RNA binding motif 2 68 IPR014720 -
Vvi5g357 826 Pfam Double-stranded RNA binding motif 88 152 IPR014720 -
Vvi5g357 826 MobiDBLite consensus disorder prediction 372 398 - -
Vvi5g357 826 PANTHER - 1 554 - -
Vvi5g357 826 SMART DRBM_3 2 69 IPR014720 -
Vvi5g357 826 SMART DRBM_3 88 154 IPR014720 -
Vvi5g357 826 Pfam F-box-like 589 633 IPR001810 GO:0005515
Vvi5g357 826 CDD DSRM_AtDRB-like_rpt2 86 154 IPR044451 GO:0003725
Vvi5g357 826 PANTHER DOUBLE-STRANDED RNA-BINDING PROTEIN 2 1 554 - -
Vvi5g357 826 SUPERFAMILY F-box domain 589 666 IPR036047 GO:0005515
Vvi5g357 826 CDD DSRM_AtDRB-like_rpt1 1 69 IPR044450 GO:0003725
Vvi5g357 826 SMART fbox_2 591 631 IPR001810 GO:0005515
Vvi5g357 826 Gene3D - 577 669 - -
Vvi5g357 826 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 87 155 IPR014720 -
Vvi5g357 826 SUPERFAMILY dsRNA-binding domain-like 2 69 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g357 - - - vvi:100266564 1116.68
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi5g357 Vvi14g422 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g357 . . . . . Bpe14g01148 . . . . Cma06g01467 . Car06g01265 . Sed02g1220 Cpe08g00213 Cpe03g01387 Bhi01g00951 Tan10g0951 Cmetu06g2030 . Hepe05g1482 . Lcy11g1452 . . . . . . . . . . . Lsi05g01503 . . Cme06g00690 . . . . . . . . . Cmo06g01467 Cmo14g01686 . . . . . . . . . . . . . . . . . . . . . Csa03g01415 Chy06g00657 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011885 1 1 1 0 1 1 2 1 1 1 0 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 30