Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g36 ATGCATTTGAAGGAGGGATGTTCCTTACTTTTAAAAGTTCGCAAACCTTCAATCCCTTTTGTGCTCAGCACGAATCCAGTTCCGAATCTCAAAGCCGAAAATGAAGAAAAATCGTCCGTTCTGAAAGAGGCCGATGTTCTAAAGAGGTTGAAACATGAGCATGATATCACTCTTGCATTAGAGTATTTCAAGTCTATTGCAAATTCGAAATCTTTCAAACACACGCCTCTGACCTACCAAATGATGATTGAGAAGCTCGCTAGTGAACGTGAGATGGATTGTGTTCAGTACCTTTTGCAGCAAATGAAGTTAGAGGGTATTAGTTGCTCTGAGGATCTATTTATTAGTGTGATAGGTTCGTATAGGCGAGCGGGTTCTTCTGAGCAAGCGTTGAAAACGTTTTATAGGATGCAAGATTTCCGTGTTAAACCCACTGTTAAGATTTACAATCACATCTTGGATGCATTGCTTGACGAGAATAGGTTTCAGATGATCAACCCTATATATAGTAATATGAAGAAAGATGGTATGGAGCCCAATGTGTTTACATACAACATTCTTTTGAAAGCATTGTGTAAGAATAATCGGGTGGATGGGGCCCACAAATTACTTGTGGAAATGTCGAGCAAGGGATGTGATCCTGATGAGGTGAGCTATACAACATTGATATCTTCTTTGTGTAAGCTCGGTAAGGTGAAGGAAGCCAGGGAGCTTGCCATGAGTTTCACTCCATCTGTACCTGTTTATAATGCTTTGATAAATGGGGTGTGCAAGGAATACACATTTGAGGAGGCATTTCAGTTATTAGATGAAATGATGAACAAAGGGATTGACCCTAATGTTATTTCATACACAACTATCATCAATGCCCTCTCCGATGCAGGGAATGTTGAGCTGTCTCTTGCTGTTTTAGCCAAAATGTTTGCGAGAGGATGTAGTCCCAATCTTCACACATTTACTTCCTTGATAAAGGGTTTTTTCTTGAAAGGGGGATCACATGAAGCTCTTGACTTTTGGGACCGGATGATAAGGGAAGGAGTTGTGCCCAATGTTGTTGCATATAATGCACTAATGCATGGTTTATGCTCTAAGAGGAGCTTGGGTGATGCTGTATCTGTTTTCAATCAAATGGAGATAAATGGATGCTGTCCAAATGTGAGGACATATAGTGCTCTTATTGATGGCTATGCAAAAGCTGGAGACTTGGATGGTGCATCTGAGGTATGGAACTGGATGATAACTCATGGTTGCCATCCTAATGTTGTGGCTTATACCTGCATGGTGGATGTTCTTTGCAGGAATTCTATGTTTAACCAAGCTTATTGTCTTATAGAGAATATGCAAGTGGAAAATTGTCCTCCAAATACAGTTACATTCAATACATTTATCAAAGGTTTATGTGGAAGTGGAAGAGTAGATTGGGCAATAAAGGTGTTTGATCAAATGGGAAACTCTGGCTGTTTTCCTAATACCACGACCTACAATGAGCTATTGGACAGTCTCTTGAAAGACAGAAGGTTTGGAGAAGCCTTTGGACTTGTTAAGGATATGGAACATAGGGGGATTGAGCTGAATTTAGTGACGTATAATACTATTATATATGGTTATTGTTGTGCTGGTATGCTTGGGGAGGCTTTGGAGCTTTTAGGGAAAATGGTGGTTAGAGGTACGAAGCCCGATGCCATCACAGTTAATATAGTAATTGATGCATACTGTAAGCAAGGTAAGGTTAACATTGCTATTCAACTTATGGACAGATTGAGTGCAGGGAAATGGCACCCAGATATAATTGCTTACACTAGTCTTATAAGTGGGATCTGTACACATATAGGTGTGGAAGAGGCCATTGTTTATCTTAGGAGGATGTTAAGTGAAGGGATCTCACCCAATGTTGCCACATGGAATGTTCTAGTGCGGCATTTATTTAGCAACATGGGTCATTCAGGAGCTGTTCAATTTCTAGATGCTAGCTCCATAATGCAACCCAAGTTCGTGGTGCTTATAATCACAAAGGAGGCAGGGGGACAGCTTCACTCAGTTTCATCCATGGGTTCACCGGTTGAGCGAGCAATCTGTGCAAAGAACCAATTTCTCTTTCCCTTGAACTTGAAGCATCATTTGCTCATCATTATTTGTCATGATGCAAATATTCAGATTTCCACATCATGTGGTTAG 2175 40.51 MHLKEGCSLLLKVRKPSIPFVLSTNPVPNLKAENEEKSSVLKEADVLKRLKHEHDITLALEYFKSIANSKSFKHTPLTYQMMIEKLASEREMDCVQYLLQQMKLEGISCSEDLFISVIGSYRRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQMINPIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLGKVKEARELAMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMDRLSAGKWHPDIIAYTSLISGICTHIGVEEAIVYLRRMLSEGISPNVATWNVLVRHLFSNMGHSGAVQFLDASSIMQPKFVVLIITKEAGGQLHSVSSMGSPVERAICAKNQFLFPLNLKHHLLIIICHDANIQISTSCG* 725
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 401102 404183 - Vvi5g36 Vvi5g36 786178

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g36 724 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 525 559 IPR002885 -
Vvi5g36 724 Gene3D Tetratricopeptide repeat domain 589 658 IPR011990 GO:0005515
Vvi5g36 724 Gene3D Tetratricopeptide repeat domain 519 588 IPR011990 GO:0005515
Vvi5g36 724 Gene3D Tetratricopeptide repeat domain 163 240 IPR011990 GO:0005515
Vvi5g36 724 Gene3D Tetratricopeptide repeat domain 448 518 IPR011990 GO:0005515
Vvi5g36 724 TIGRFAM PPR: pentatricopeptide repeat domain 388 421 IPR002885 -
Vvi5g36 724 TIGRFAM PPR: pentatricopeptide repeat domain 598 631 IPR002885 -
Vvi5g36 724 TIGRFAM PPR: pentatricopeptide repeat domain 317 351 IPR002885 -
Vvi5g36 724 TIGRFAM PPR: pentatricopeptide repeat domain 282 315 IPR002885 -
Vvi5g36 724 TIGRFAM PPR: pentatricopeptide repeat domain 182 216 IPR002885 -
Vvi5g36 724 TIGRFAM PPR: pentatricopeptide repeat domain 562 595 IPR002885 -
Vvi5g36 724 TIGRFAM PPR: pentatricopeptide repeat domain 248 281 IPR002885 -
Vvi5g36 724 TIGRFAM PPR: pentatricopeptide repeat domain 493 525 IPR002885 -
Vvi5g36 724 TIGRFAM PPR: pentatricopeptide repeat domain 527 561 IPR002885 -
Vvi5g36 724 TIGRFAM PPR: pentatricopeptide repeat domain 116 145 IPR002885 -
Vvi5g36 724 TIGRFAM PPR: pentatricopeptide repeat domain 457 491 IPR002885 -
Vvi5g36 724 TIGRFAM PPR: pentatricopeptide repeat domain 352 386 IPR002885 -
Vvi5g36 724 TIGRFAM PPR: pentatricopeptide repeat domain 422 456 IPR002885 -
Vvi5g36 724 TIGRFAM PPR: pentatricopeptide repeat domain 217 238 IPR002885 -
Vvi5g36 724 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 279 IPR002885 -
Vvi5g36 724 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 595 629 IPR002885 -
Vvi5g36 724 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 110 144 IPR002885 -
Vvi5g36 724 Gene3D Tetratricopeptide repeat domain 330 447 IPR011990 GO:0005515
Vvi5g36 724 PANTHER OS05G0132000 PROTEIN 6 648 - -
Vvi5g36 724 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 455 489 IPR002885 -
Vvi5g36 724 Pfam PPR repeat 493 522 IPR002885 -
Vvi5g36 724 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 145 179 IPR002885 -
Vvi5g36 724 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 490 524 IPR002885 -
Vvi5g36 724 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 350 384 IPR002885 -
Vvi5g36 724 Gene3D Tetratricopeptide repeat domain 44 162 IPR011990 GO:0005515
Vvi5g36 724 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 560 594 IPR002885 -
Vvi5g36 724 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 280 314 IPR002885 -
Vvi5g36 724 Pfam PPR repeat 310 342 IPR002885 -
Vvi5g36 724 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 315 349 IPR002885 -
Vvi5g36 724 Pfam PPR repeat family 594 641 IPR002885 -
Vvi5g36 724 Pfam PPR repeat family 349 398 IPR002885 -
Vvi5g36 724 Pfam PPR repeat family 525 573 IPR002885 -
Vvi5g36 724 Pfam PPR repeat family 179 228 IPR002885 -
Vvi5g36 724 Pfam PPR repeat family 419 467 IPR002885 -
Vvi5g36 724 Pfam PPR repeat family 244 292 IPR002885 -
Vvi5g36 724 PANTHER ATPASE EXPRESSION PROTEIN 3 6 648 - -
Vvi5g36 724 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 180 214 IPR002885 -
Vvi5g36 724 Pfam Pentatricopeptide repeat domain 98 156 IPR002885 -
Vvi5g36 724 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 420 454 IPR002885 -
Vvi5g36 724 Gene3D Tetratricopeptide repeat domain 241 329 IPR011990 GO:0005515
Vvi5g36 724 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 385 419 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g36 - - - vvi:100248321 1319.29
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g36 . . . Bda08g00324 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa06g01856 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008622 1 3 1 1 1 0 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 31