Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g361 ATGGGGTGCGTGTTTGGAAGAGAGGTTTCGGCCAAGAGAGTGGTGGAGAGGAGGGAAGACAGGGATGTGGCAGCGGCGGAGGCAGCAGCAGCGACGGTAGCAGTGGTTAGGGTTGAGAAGGAGGAGGTGAGGAACGGCGGTGATCGCAAGGAGGAGGAGAAGGAGGGAAGTGTGCGTTCCAGGAGGCGATCGGGGAGGCCGAATCCTAGGTTGAGCAATCCTCCAAAGAATGTTCACGGCGAGCAGGTGGCTGCCGGGTGGCCGTCTTGGCTCTCAGCGGCCGCGGGCGAGGCTATCAATGGCTGGACGCCTCGCCGGGCTGATACGTTTGAGAAGCTTGATAAGATTGGGCAAGGCACATATAGCAACGTATACAAAGCTAGGGATACTTTGACAGGGAAAATTGTGGCATTGAAGAAGGTAAGATTCGACAATTTGGAGCCAGAGAGTGTAAAGTTCATGGCTAGAGAGATTCATATTCTAAGACGGTTGGATCACCCAAATGTGGTAAAATTGGAAGGTTTAGTGACTTCAAGGATGTCCTGTAGTCTATACCTTGTATTTGAGTATATGGAGCATGATTTGGCTGGACTTGCTGCAAGCCCAGGGATCAAGTTCACAGAACCTCAGGTCAAATGTTACATGCATCAATTATTATCAGGGCTAGAACACTGTCATAATCGCAATGTGCTGCACCGTGATATTAAGGGGTCAAATCTTCTTCTTGACAATGGAGGAGTTCTCAAGATTGCTGATTTTGGTCTGGCTTCTACTTTTGATCCTAATCATAAGCAGCCCATGACTAGTAGAGTGGTTACTCTATGGTATCGGCCACCGGAACTGCTTCTTGGGGCCACCGAATATGGTGTAGGTGTGGACCTCTGGAGTGCTGGCTGCATTCTAGCTGAGTTATTGGCCGGGAAGCCTATCATGCCTGGTCGCACCGAGGTGGAGCAGCTACACAAGATATTTAAGCTATGTGGCTCTCCTTCTGAAGAATACTGGAAAAAATCAAAGTTGCCGCATGCAACCATATTTAAGCCTCAACAATCATACAAGCGATGCATAGCAGAGACATTTAAGGATTTTCCAGCATCATCATTGCCCCTAATTGAGACACTTCTTGCAATTGATCCAGCTGAACGTCAAACTGCCACTGCTGCATTGAGGAGTGAATTCTTCACAACCAAACCTTATGCTTGTGAGCCTTCCAGCCTTCCAAAATATCCTCCCAGCAAGGAGATGGATGCTAAATTACGGGATGAAGAAGCCAGAAGATTGAGAGCTGCTGGCAAAGCTAATGTAGATGGAGTGAAGAAAACTCGTACACGTGATCGAGCTGTAAGGGCAATGCCTGCTCCAGAAGCCAATGCTGAGCTGCAAGCCAATCTTGATAGGCGACGTCTAATAACTCATGCAAATGCCAAGAGCAAGAGTGAAAAGTTTCCTCCCCCACACCAGGATGGAACCCTTGGCTACCCATTGGGTTCTTCACACCACCTTGATCCAGTCTTTGATCCTCCTGATGTCCCATTCAGTTCCTCCAATTTCACATATTCAAAAGCACCCATCCAAACGTGGTCAGGCCCATTGGTTGATCCTGCTGCTGTAGGTGCTCCAAGGAGAAAAAAATATATGGCAGAATTCTGCTCGGGTCAAAGAGAAAGAAGGCATGTAACATATTATTTCTAG 1692 48.23 MGCVFGREVSAKRVVERREDRDVAAAEAAAATVAVVRVEKEEVRNGGDRKEEEKEGSVRSRRRSGRPNPRLSNPPKNVHGEQVAAGWPSWLSAAAGEAINGWTPRRADTFEKLDKIGQGTYSNVYKARDTLTGKIVALKKVRFDNLEPESVKFMAREIHILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAASPGIKFTEPQVKCYMHQLLSGLEHCHNRNVLHRDIKGSNLLLDNGGVLKIADFGLASTFDPNHKQPMTSRVVTLWYRPPELLLGATEYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQQSYKRCIAETFKDFPASSLPLIETLLAIDPAERQTATAALRSEFFTTKPYACEPSSLPKYPPSKEMDAKLRDEEARRLRAAGKANVDGVKKTRTRDRAVRAMPAPEANAELQANLDRRRLITHANAKSKSEKFPPPHQDGTLGYPLGSSHHLDPVFDPPDVPFSSSNFTYSKAPIQTWSGPLVDPAAVGAPRRKKYMAEFCSGQRERRHVTYYF* 564
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3594892 3606380 + Vvi5g361 Vvi5g361 786503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g361 563 ProSitePatterns Serine/Threonine protein kinases active-site signature. 230 242 IPR008271 GO:0004672|GO:0006468
Vvi5g361 563 Pfam Protein kinase domain 110 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g361 563 ProSiteProfiles Protein kinase domain profile. 110 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g361 563 ProSitePatterns Protein kinases ATP-binding region signature. 116 139 IPR017441 GO:0005524
Vvi5g361 563 SMART serkin_6 110 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g361 563 MobiDBLite consensus disorder prediction 39 81 - -
Vvi5g361 563 Gene3D Transferase(Phosphotransferase) domain 1 193 433 - -
Vvi5g361 563 PANTHER CELL DIVISION PROTEIN KINASE 52 547 - -
Vvi5g361 563 MobiDBLite consensus disorder prediction 39 62 - -
Vvi5g361 563 SUPERFAMILY Protein kinase-like (PK-like) 103 399 IPR011009 -
Vvi5g361 563 Gene3D Phosphorylase Kinase; domain 1 97 192 - -
Vvi5g361 563 CDD STKc_CDK9_like 110 394 - -
Vvi5g361 563 PANTHER OS01G0367700 PROTEIN 52 547 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi5g361 Vvi14g419 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76661 PF00069 Pkinase 5.70E-69 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g361 K08819 - vvi:100240938 998.423