Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g364 ATGCCTGAGGAGCTGCTCAGAGAGGTGCTTATCAGAATTGAGGCGTCTGACACCACCTGGCCTTCCCGGAAAAATGTGGTCGCCTGCGCCGGAGTCTGCAAGAGCTGGCGCCGTATCACTCAGGAACTCGTCAAGACGCCGGAAGTCTCCGCCTCGTTGACCTTTCCGATTTCGGTCAAGCAGCCTGGTCCAAGAGAATCTCTACTCAAGTGTTTTATAAAACGGAATCGGTCTGCTCAGACGTATTATCTTTACCTCAGTTTAACTAATGCACTAACTGAAGATGGAAAGTTCCTCTTGGCTGCGCGTAAGTACAGACGTACCACCTGCACAGATTATATCATTTCTCTGTATGCTGATGACATGTCAAAGGGGAGCAGCACCTATATTGGAAAATTGAGATCAAATTTTCTAGGAACCAAGTTCACAGTCTATGATGGGCAGCCACCTCATTCTGGAGCCAAGATTATGCGAAATCGCTCCACTAGGCTGGTGGGTTTGAAACAAGTCTCACCCAGAGTCCCTGCTGGAAGCTATCCAGTAGCTCACATCTCATATGAAGTGAATGTGCTGGGTTCTAGGGGTCCAAGGAGAATGCAGTGTAGCATGGATTCCATCCCTGCCTCAGCTATTGAACCAGGGGGAGTGACCCCCACACAGACAGAGATTCGACTCAGCAACCCAGATGTCTTTCCATCCTTCTCATTTTTCCGCTCGAAATCACACAGTGTGGAAAATTCTTTATCAGAACCATTAGCCGATAAAAAGGATGGAGCGCTGGTGTTGAAGAACAAGGCTCCCAGGTGGCACGAGCAGCTCCAGTGCTGGTGTTTGAACTTCCATGGACGGGTGACAGTTGCTTCAGTGAAAAACTTTCAGCTGGTGGCTTCTCCAGAGGATGGACCTGCAGGCCAGCAACATGAGAAGATCATCCTCCAGTTCGGAAAAGTGGGGAAGGATCTATTTACCATGGATTACCGGTATCCAATCTCTGCTTTCCAGGCATTTGCAATCTGCCTCAGCAGCTTTGACACCAAAATTGCTTGTGAATGA 1053 48.81 MPEELLREVLIRIEASDTTWPSRKNVVACAGVCKSWRRITQELVKTPEVSASLTFPISVKQPGPRESLLKCFIKRNRSAQTYYLYLSLTNALTEDGKFLLAARKYRRTTCTDYIISLYADDMSKGSSTYIGKLRSNFLGTKFTVYDGQPPHSGAKIMRNRSTRLVGLKQVSPRVPAGSYPVAHISYEVNVLGSRGPRRMQCSMDSIPASAIEPGGVTPTQTEIRLSNPDVFPSFSFFRSKSHSVENSLSEPLADKKDGALVLKNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPEDGPAGQQHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE* 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3627457 3630257 - Vvi5g364 Vvi5g364 786506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g364 350 Pfam Tub family 59 345 IPR000007 -
Vvi5g364 350 ProSitePatterns Tub family signature 1. 280 293 IPR018066 -
Vvi5g364 350 PANTHER TUBBY-RELATED 1 350 - -
Vvi5g364 350 PRINTS Tubby superfamily signature 113 129 IPR000007 -
Vvi5g364 350 PRINTS Tubby superfamily signature 129 153 IPR000007 -
Vvi5g364 350 PRINTS Tubby superfamily signature 178 205 IPR000007 -
Vvi5g364 350 PRINTS Tubby superfamily signature 262 279 IPR000007 -
Vvi5g364 350 PRINTS Tubby superfamily signature 280 296 IPR000007 -
Vvi5g364 350 PRINTS Tubby superfamily signature 307 326 IPR000007 -
Vvi5g364 350 PRINTS Tubby superfamily signature 328 350 IPR000007 -
Vvi5g364 350 SUPERFAMILY Tubby C-terminal domain-like 47 350 IPR025659 -
Vvi5g364 350 Gene3D Tubby Protein; Chain A 55 350 IPR025659 -
Vvi5g364 350 Pfam F-box domain 1 43 IPR001810 GO:0005515
Vvi5g364 350 ProSitePatterns Tub family signature 2. 335 350 IPR018066 -
Vvi5g364 350 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 1 350 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi5g364 Vvi7g215 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14844 PF01167 Tub 7.50E-111 CL0395 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g364 K19600 - vvi:100258055 703.36