Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g37 ATGGCATCGCACATTTCTCTAACCACCGCCTCCCTCATCGTCTTCCTCGTCCTCCTCCCAATCTCCTATGGAGGCTCTGTGCCGGAATCTGACATAGATCTCGTCGAGTTTCCTTTGAATTTAGAGTTTCTTGAGGCTGAATTCTTTTTGTGGGGATCTCAGGGATATGGGTTAGACACAGTAGCTGCGAATCTCAGCAAGGGAGGTCCACCACCAGTCGGTGCAAGAAAGGCTACTCTCGACCCATTCATCAGAGATGTCATCTACCAATTCGCTCTCCAAGAAATCGGACACCTGAGGGCGATTCAGAGCAAAGTAAAGGGGTTCCCTCGGCCATTGTTGAATCTGAGTGCAGCGTCATTTGCAGATGTCATGAACAGCGCATTTGGCAAGCCTCTGAATCCCCCCTTTGACCCTTACGCCAACGGACTCAACTTCCTTCTCGCATCGTACGTCATTCCGTACGTGGGACTCACTGGATACGTGGGCACAAATCCAAACCTCCAAGGTGCTGCTTCCAAAAGGCTAGTTGCAGGCCTGTTGGGCGTGGAGTCAGGCCAAGATGCAGTGATCCGAGCCCTGCTCTACAGGAAGGCGGCAGCAAAGGTCCACCCATATGGCATAACTGTTGCAGACTTCACGTATCGGATCTCGAACCTGAGGAATAATCTGGGAAAGTCGGGGTTGAAAGACGAAGGGCTTGTGGTGCCTCCAGTTCGCGGCGCCGAGGGAAAAAGTAGGGGGAATGTGCTAGCGGGAGACAAGTTCTCGCTTGCTTATGCTAGAAAGCCAGAGGAGATTCTGAGAATAGTGTATGGGGGAGGTAGCGAACGTAATCCAGGGGGATTCTACCCTCAAGGAGCCAACGGGAGAATTGCTAGGTCTTTTTTACAGAAGTCCAAGGCGTTGAAAATCACTCTTACGCCCCTACCTCTGCCTCACTTTCTATTCCCTTGTAAATATCAATTGAAGTTGAAGAAAAATTCGGGCTCAATCCAAGATAGAGAAAAGAGAGAAGAAGGGAATCGAGCATCACCTTCTTCACCAGGTCAAAAGGAGAAAATGGCTGGACGCAATGATTCAGGTGCATCTGAGAAGAAATCAAATGAGGCCACAAATGATATGCCAACTTTCAATGCCGAGAATTTGCAAAGTAACATGAAAATTATTTATTACAGCCGAACATTTTTGTCCATCATTGGTGGAGTCATTGCTGGAATTTTGGGATTTACTGGCTTCACTGGCTTTATATTTTACTTTCTTGTTATGGCAATTACTTCAGTAGGACTCATGGCCAAGGCAAAGTTTTCTGTGCATTCATACTTTGATTCCTGGAACCGTATCATACTTGATGGCTTCCTTGGTGGGCTTATGTCATTCGTGCTGTTCTGGACATTGGCTTATGATATTGTGCATATATTCTGA 1425 47.44 MASHISLTTASLIVFLVLLPISYGGSVPESDIDLVEFPLNLEFLEAEFFLWGSQGYGLDTVAANLSKGGPPPVGARKATLDPFIRDVIYQFALQEIGHLRAIQSKVKGFPRPLLNLSAASFADVMNSAFGKPLNPPFDPYANGLNFLLASYVIPYVGLTGYVGTNPNLQGAASKRLVAGLLGVESGQDAVIRALLYRKAAAKVHPYGITVADFTYRISNLRNNLGKSGLKDEGLVVPPVRGAEGKSRGNVLAGDKFSLAYARKPEEILRIVYGGGSERNPGGFYPQGANGRIARSFLQKSKALKITLTPLPLPHFLFPCKYQLKLKKNSGSIQDREKREEGNRASPSSPGQKEKMAGRNDSGASEKKSNEATNDMPTFNAENLQSNMKIIYYSRTFLSIIGGVIAGILGFTGFTGFIFYFLVMAITSVGLMAKAKFSVHSYFDSWNRIILDGFLGGLMSFVLFWTLAYDIVHIF* 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 422188 430622 + Vvi5g37 Vvi5g37 786179

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g37 474 MobiDBLite consensus disorder prediction 328 377 - -
Vvi5g37 474 Pfam EMC6 390 468 IPR029008 -
Vvi5g37 474 MobiDBLite consensus disorder prediction 329 343 - -
Vvi5g37 474 PANTHER DESICCATION-LIKE PROTEIN 7 297 - -
Vvi5g37 474 Pfam Ferritin-like domain 30 196 - -
Vvi5g37 474 PANTHER DESICCATION-LIKE PROTEIN 7 297 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g37 - - - vvi:100253439 593.578
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g37 Blo01g00040 . . Bda08g00323 . Bpe14g01088 . . . Cmo17g00372 Cma06g01574 . Car06g01337 . . Cpe08g00142 . . . . . . . . Cla06g00414 Cam06g0436 Cec06g0442 Cco06g0441 Clacu06g0423 Cmu06g0422 Cre06g1201 . Cone15ag0717 . . . . Chy11g01586 . Blo02g00470 . . Bda13g00227 . . Bma02g00938 . . Cmo06g01568 . . Cma17g00383 . Car17g00354 Cpe12g00334 . Bhi12g01951 . . Lac11g0985 Hepe03g0033 . . . . . . . . . Lsi09g01508 . . Cme11g02095
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001021 3 2 2 1 0 3 3 3 3 3 2 3 3 2 2 3 3 4 2 3 2 2 4 4 4 2 2 6 2 3 81