Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g370 ATGAATCAATATCATATCTACGAGGCCATTGGCAGGGGCAAATACTCGACTGTGTACAAAGGGAGGAAGAAGAAGAGTATTGAGTACTTCGCGATTAAGAGTGTGGATAAATCGCAGAAGAACAAACTTCTACAAGAAGTTAGGATTCTTCACTCTCTAGATCACTCGAATGTACTAAATTTTTTTTCTTGGTATGAAACTTCTGCTCACTTGTGGTTAGTTTTGGAATATTGTGTCGGAGGAGATCTTATGACCTTATTACAGCAGGATAGTCAGCTTCCTGAAGATTCAGTACATGATCTTGCCCGTGACCTTGTCAGAGCTTTGCAGTTTTTACATTCTAAGGGAATCATATACTGTGACTTAAAACCATCAAATATCCTATTGGATGAGAATGGGTGCACAAAGCTATGTGATTTTGGATTAGCAAGAAAATTGAGTGATATATCAAAAACACCTTCTTCCATGTTGCCACAAGCAAAACGTGGAACACCATGTTATATGGCTCCAGAGCTGTTTCAGGATGGAGGCGTGCATTCTTATGCTTCCGATTTCTGGGCCCTTGGTTGTGTACTATATGAGTGCTATGCTGGAAGACCCCCCTTTGTGGGAAGAGAATTTACTCAGTTAGTAAAATCCATCCTCTCAGATCCCACTCCAACCCTGCCTGGTACGCCGAGCCGTCCCTTTGTTAATCTAATCAATTCTCTCCTGGTAAAAGATCCAGCTGAAAGAATACAGTGGCCTGAACTTTGTGGGCATGCTTTCTGGAGAACAAAATTCACATCAGTGCCTCTACCTCCTCAGCCTGCTTTTGATAATTTGATAGACCTTTATTCTAAACTGTGTGGACGCAGAGCTCAAACAAAGGCTTCTGGAAGAGTAGCTGATGAGAAGCAGAAAGATCCTTCAAGTGCTACCGGGGGTGTGAATCTTTTAAGGCTCTCAAGAATTGCAAAATCAAACTTACAGAGAGAGAATGAGAAGGAAAACTACCGAAGGCCCTTGCCAAATAACTCTGAAAATGATTCTGAGCATCAGGGGAAAGTGGAAGAGATGGAAGATAACACAAACCAACTAGATACTGCACATGTTGTCAGCATACCTGTCTCAGATGACTCGAGAACATTTGATCATGAATCAGACCATGTTGAAGTGGCTGCTACCCCGCCCAGTGTTAGTCCTCAGGTTAGAATCCAGAGGGTTAAAGAAGGTTCAGCTGATAAATTGCCAGAGACACTTCCTTCTCTTCCCTTTGATGCACTGGCAGCATCTGATTTCATCAAGATGTCCAAGGAGCAGCTTGATTCACTCAACAATAGGATTATAACCATCTTTAATGGTAACACTACCATTGCAGAGAAGCAGAATGTGATCAAATACCTTGAAATGTTGAGCAATAATGCTGATGCTGCGAATATCTTAACCAATGGGCCAATCATGATGGTTATTGTCAAAATGCTCCGACAGTCCAAGGCATCTGCTTTGCGTGTTCAGCTTGCTTCACTGATTGGTTTGTTAATTCGGCATTCTACTTTCATTGATGATGATTTGGCAAGTTCTGGAATTTTAGGTTCTCTTACTGACGGTCTTAGAGATAGGCAGGAAAAAGTAAGGAGGTTTTCTATGGCTGCATTGGGTGAGTTGCTATTTTATATATCCACTCAGAATGAACATGCTAAAGATAACAATCCACCAGAATCCCCATCAAAGGATAGCCGGTCCTCATCTGGTTGGCAGGTTTCAAATGCGTTAATATCATTGGTGTCATCAATTTTACGGAAAGGAGAGGATGATGTAACTCAACAGTATGCACTGAGAACAATAGAAAACATATGCAGTCAGGGAGGGAACTGGGCAGCTCGTTTCACCAGCCAGGATGTAATTAATAACCTGTGCTATATATTTAGGGCTGCAGGGAAACAAGAGAGCATGAGACTCACAGCAGGATCGTGCAGTCCACGTGAGCAGCAAATCAGCTTAAACCTTCTAAACATGGCCATGCTTGGAAGCCATATGTTCACAAACATTGGCCGGCACCTTCTGCCCTTGCCCTCCTTTGTAAGAATGTGTTTAGATGCATTTTTGCATGTTGTGTCATCTACTATTCCAGGTTTGCTGGAGACTATAACTGGAGATATTCAGCAAATGATGGGAGGAAGGCGGCATGGCCAAATTGCTGGCCTTACCAATCGGGCTGCCCCAAAAATTAAAGTTCATTTGTTTCCTGTTGTTCTTCATCTTCTTGGGAGCTCATCATTTAAGCACAGGGTTGTGAATCATCAAGTGCTGCAGCAATTGGCAAATCTAATCAAACTTGCAGAGTCACCATTTCAGGGTAGGGATGACTTCCAAATAACTCTTCTGCGAGTGCTTGAGTCTATAACAGAGGAGCCCTCTGTAATTCTTGAAAGCGCTAATGTTTTCATTGGTGAAATTCTCCCAAGTTTGGCTGTTCTGTACAGGGGGAACAAAGATGGAGATGCCAGATTTTTGTGCCTGAAAATTCTATTTGATGCAATGGTCATATACTTAAATGAACCATCAGAAGTTGAGCAAAGATCAGAGGACTTGAAGTCCATATCCAATACTCACTTCCTGCCCCTTTACCCCACTCTCATTGAGGATGAAGATCCCATTCCCATGTATGCGCAGAAGCTTCTTGTGATGTTTATCGAGTTTAATTACATTAGAATTCCAGACATTCTACATATGGAGACATTGCTCTCTCAATTAAAAGTAGTCAGGAAGATTGGAAACCTTCTTGAGTTTGTCAATGCAAAAGATATGGAAGATTTTCTTGAACCTACTCTTGGCCTGTGTAGGGCTTTTCTTCTACGTTCAGTAGGCAGTAGAAAAGGCTTCATCTATTCAAAAGAACCAACTCTCATATGTGATGGTCCTACTGAAGTGAGAGGTGCAGTTGATCAGCAGCAATACATAAGGGATATAATGGACTTTGGTAGCAACGTTAGTGTTTTTCTGGAATTAAGTGGCTCAGATGAAGCCAATGTTGCAGATATAGCTTCTGAATGTGTGGTTTTGTTGCTCAAGGCTGCTCCCAGGGAAGCCACTACTGGTTTTCTAACTAATCTCTCAAAGGTTAGTGCACTTCTTGAGTCCTGGCGAAGGGCTGTCTCTCACTTACTGGTGCTGCGGATGCTGCATGCTCTTGGGTACTCCTGTAGGCAATATTTGTCACATGCAATGATATTATCAATATCTATCCCAGAGATTTCAAGACTTGAAACCATTGTTTCTGAGCTTAAAAACTCAAGCATCCCAGGCGTAGCTGATGCTGCTTTGCTTGTGGCCAAGGAGTTGCAGCGGCTTCCCCGGTGCAATTGA 3348 42.41 MNQYHIYEAIGRGKYSTVYKGRKKKSIEYFAIKSVDKSQKNKLLQEVRILHSLDHSNVLNFFSWYETSAHLWLVLEYCVGGDLMTLLQQDSQLPEDSVHDLARDLVRALQFLHSKGIIYCDLKPSNILLDENGCTKLCDFGLARKLSDISKTPSSMLPQAKRGTPCYMAPELFQDGGVHSYASDFWALGCVLYECYAGRPPFVGREFTQLVKSILSDPTPTLPGTPSRPFVNLINSLLVKDPAERIQWPELCGHAFWRTKFTSVPLPPQPAFDNLIDLYSKLCGRRAQTKASGRVADEKQKDPSSATGGVNLLRLSRIAKSNLQRENEKENYRRPLPNNSENDSEHQGKVEEMEDNTNQLDTAHVVSIPVSDDSRTFDHESDHVEVAATPPSVSPQVRIQRVKEGSADKLPETLPSLPFDALAASDFIKMSKEQLDSLNNRIITIFNGNTTIAEKQNVIKYLEMLSNNADAANILTNGPIMMVIVKMLRQSKASALRVQLASLIGLLIRHSTFIDDDLASSGILGSLTDGLRDRQEKVRRFSMAALGELLFYISTQNEHAKDNNPPESPSKDSRSSSGWQVSNALISLVSSILRKGEDDVTQQYALRTIENICSQGGNWAARFTSQDVINNLCYIFRAAGKQESMRLTAGSCSPREQQISLNLLNMAMLGSHMFTNIGRHLLPLPSFVRMCLDAFLHVVSSTIPGLLETITGDIQQMMGGRRHGQIAGLTNRAAPKIKVHLFPVVLHLLGSSSFKHRVVNHQVLQQLANLIKLAESPFQGRDDFQITLLRVLESITEEPSVILESANVFIGEILPSLAVLYRGNKDGDARFLCLKILFDAMVIYLNEPSEVEQRSEDLKSISNTHFLPLYPTLIEDEDPIPMYAQKLLVMFIEFNYIRIPDILHMETLLSQLKVVRKIGNLLEFVNAKDMEDFLEPTLGLCRAFLLRSVGSRKGFIYSKEPTLICDGPTEVRGAVDQQQYIRDIMDFGSNVSVFLELSGSDEANVADIASECVVLLLKAAPREATTGFLTNLSKVSALLESWRRAVSHLLVLRMLHALGYSCRQYLSHAMILSISIPEISRLETIVSELKNSSIPGVADAALLVAKELQRLPRCN* 1116
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3710368 3717780 - Vvi5g370 Vvi5g370 786512

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g370 1115 CDD STKc_ULK4 3 257 - -
Vvi5g370 1115 ProSitePatterns Serine/Threonine protein kinases active-site signature. 117 129 IPR008271 GO:0004672|GO:0006468
Vvi5g370 1115 Gene3D Transferase(Phosphotransferase) domain 1 1 331 - -
Vvi5g370 1115 SMART serkin_6 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g370 1115 SUPERFAMILY ARM repeat 430 874 IPR016024 -
Vvi5g370 1115 MobiDBLite consensus disorder prediction 289 354 - -
Vvi5g370 1115 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Vvi5g370 1115 MobiDBLite consensus disorder prediction 558 578 - -
Vvi5g370 1115 PANTHER SERINE/THREONINE-KINASE ULK4-LIKE PROTEIN-RELATED 686 908 IPR044591 GO:0000911|GO:0000914|GO:0008017
Vvi5g370 1115 PANTHER SERINE/THREONINE-KINASE ULK4-LIKE PROTEIN-RELATED 1 684 IPR044591 GO:0000911|GO:0000914|GO:0008017
Vvi5g370 1115 PANTHER SERINE/THREONINE-KINASE ULK4-LIKE PROTEIN-RELATED 906 1112 IPR044591 GO:0000911|GO:0000914|GO:0008017
Vvi5g370 1115 SUPERFAMILY Protein kinase-like (PK-like) 1 258 IPR011009 -
Vvi5g370 1115 Gene3D - 451 837 IPR011989 -
Vvi5g370 1115 Pfam Protein kinase domain 4 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g370 1115 MobiDBLite consensus disorder prediction 321 354 - -
Vvi5g370 1115 ProSiteProfiles Protein kinase domain profile. 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g370 K17545 ULK4; serine/threonine-protein kinase ULK4 [EC:2.7.11.1] - vvi:100259712 2033.45
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g370 . . . . . Bpe14g01152 . . . . . Cma14g01648 . Car14g01481 . . Cpe03g01392 Bhi01g00926 . . . . . Lcy11g1459 . . . . . . . . . Cone7ag0183 Cone4ag0178 Lsi05g01496 . . Cme06g00683 Blo02g00576 . . . . . . . . . Cmo14g01692 . . . . . . . . . . . . . Cla05g00610 . . . . . . . Csa03g01408 Chy06g00651 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009196 1 1 4 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76662 PF00069 Pkinase 1.40E-64 CL0016 Vvi PK