Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g373 ATGGTGGTGGACATGAGTAAGGCAAAAACTAGTGGTGCAGACCTTGTGGAGGTCCGATTAGATACTTTGAAGCGCTTCAATCCTCGCCAAGATCTTGAAGTCCTAATCAGAAAGTGTCCTTTACCTACTCTGTTCACTTACAGACCAAAATGGGAAGGCGGCCAGTATGAAGGTGATGAAAACAGCCGAAGGGATGCACTGCGATTAGCGATGGAACTGGGAGCTGATTATGTTGACATTGAGCTTAAGGTTGCTCATGAGTTCATCAATTCCATACATGGAAGGAAGCCTGAAAAGTTCAAAGTTATTGTTTCATCGCATAACTATCAAAATACTCCATCTGTTGAAGATCTTGGCAACCTTGTGGTGAGTATACAGGCAACTGGTGCTGACATAGTGAAGATTGCAACAACTGCCTTAGAGATTACTGATGTGGCACGCATCTTTCAGATAACTGTCCATTCTCAAGTTCCGGTAATAGGACTGGTCATGGGTGAGAGGGGTTTGATTTCACGGATACTTTGCCCCAAATTCAGTGGATATCTCACTTTTGGTTCACTGGAGCCCGGAATAGTATCAGCTCCTGGGCAACCGACAATCAAAGATCTCCTCAATTTATACAATTTCAGGCAGTTAGGGCCTGATACTAAAGTATTTGGAGTTATTGGGAAGCCTGTTAGTCACAGCAAATCACCTCATTTATACAATGAAGCATTCAAATCAGTTGGTTTTAATGGAGTTTATGTGCATTTATTGGTGGATGACATTGCAAAATTTTTTCACACTTACTCAGCCGCTGATTTTGCTGGTTTCAGTTGTACGATTCCTCACAAGGAGGCTGCACTTAAGTGCTGTGATGAGGTCAGTCCAGTTGCAAAGTCAATAGGAGCTGTTAATTGCATTATCAGGAGACCAAGTGATGGAAAGTTATTTGGCTACAATACTGACTATGTTGGTGCTATTTCTGCTATAGAGGATGGACTAAGAGATTTACATAAAATTAGCAGTACAAGTGGTTCCCCCTTAGCTGGTAAACTGTTTGTAGTCATTGGTGCTGGTGGTGCTGGAAAGGCACTAGCATATGGTGCAAAAGAAAAGGGCGCAAGAGTTGTGATTGCCAATCGCACTTATGCACGAGCAAGAGAACTTGCAGATGCAGTTGGAGGGGATGCTTTATCTCTTGCTGACTTGAATAATTTTCATCCGGAGAATGGTATGATCCTTGCAAATACAACATCTATAGGAATGCAGCCAAAGGTTGATGAAACACCCATTTCTAAGCATGCTCTGAAATATTACTCCCTTGTTTTCGATGCCATTTATACTCCCAAAATAACCAGACTATTGCGGGAAGCACAAGAGTCCGGAGCCACAATTGTTACCGGGCTGGAGATGTTCATTGGGCAGGCATATGAGCAGTTTGAGAGGTTCACAGGATTGCCTGCACCAAAGGAACTATTTAAGCAATTCATATCAAATTTGCAATAA 1488 42.47 MVVDMSKAKTSGADLVEVRLDTLKRFNPRQDLEVLIRKCPLPTLFTYRPKWEGGQYEGDENSRRDALRLAMELGADYVDIELKVAHEFINSIHGRKPEKFKVIVSSHNYQNTPSVEDLGNLVVSIQATGADIVKIATTALEITDVARIFQITVHSQVPVIGLVMGERGLISRILCPKFSGYLTFGSLEPGIVSAPGQPTIKDLLNLYNFRQLGPDTKVFGVIGKPVSHSKSPHLYNEAFKSVGFNGVYVHLLVDDIAKFFHTYSAADFAGFSCTIPHKEAALKCCDEVSPVAKSIGAVNCIIRRPSDGKLFGYNTDYVGAISAIEDGLRDLHKISSTSGSPLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYARARELADAVGGDALSLADLNNFHPENGMILANTTSIGMQPKVDETPISKHALKYYSLVFDAIYTPKITRLLREAQESGATIVTGLEMFIGQAYEQFERFTGLPAPKELFKQFISNLQ* 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3759484 3791485 + Vvi5g373 Vvi5g373 786515

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g373 495 Hamap 3-dehydroquinate dehydratase [aroD]. 1 210 IPR001381 GO:0003855
Vvi5g373 495 CDD DHQase_I 6 209 IPR001381 GO:0003855
Vvi5g373 495 Pfam Type I 3-dehydroquinase 4 207 IPR001381 GO:0003855
Vvi5g373 495 Gene3D Leucine Dehydrogenase, chain A, domain 1 216 313 - -
Vvi5g373 495 CDD NAD_bind_Shikimate_DH 364 479 - -
Vvi5g373 495 PANTHER SHIKIMATE DEHYDROGENASE 1 491 IPR022893 GO:0004764
Vvi5g373 495 TIGRFAM aroD: 3-dehydroquinate dehydratase, type I 4 206 IPR001381 GO:0003855
Vvi5g373 495 Gene3D - 314 494 - -
Vvi5g373 495 TIGRFAM aroE: shikimate dehydrogenase 217 483 IPR011342 GO:0004764|GO:0019632|GO:0050661
Vvi5g373 495 Gene3D Aldolase class I 1 215 IPR013785 -
Vvi5g373 495 SUPERFAMILY Aldolase 4 210 - -
Vvi5g373 495 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 339 492 IPR036291 -
Vvi5g373 495 Pfam Shikimate 5'-dehydrogenase C-terminal domain 462 488 IPR041121 -
Vvi5g373 495 Hamap Shikimate dehydrogenase (NADP(+)) [aroE]. 216 493 IPR022893 GO:0004764
Vvi5g373 495 Pfam Shikimate / quinate 5-dehydrogenase 341 413 IPR006151 -
Vvi5g373 495 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 208 315 IPR046346 -
Vvi5g373 495 Pfam Shikimate dehydrogenase substrate binding domain 221 301 IPR013708 GO:0004764
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g373 K13832 aroDE, DHQ-SDH; 3-dehydroquinate dehydratase / shikimate dehydrogenase [EC:4.2.1.10 1.1.1.25] - vvi:100242676 962.6
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi5g373 Vvi14g367 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g373 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001185 2 6 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 8 2 2 2 3 2 4 3 2 1 5 1 3 77