Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g374 ATGCATTCGCATCTCTTCCAAACTACGTCCAAGATCGTAGCTTTAGCGAAATTGGGTAGAATTACCTCTGCCCGCAGACTGTTCGACGAAATGCCGCACAAAGACACAGTAGCTTGGAACGCCATGCTTGCTAGCTATTCTCAACTGGGTCTTCACCAGCAAGCTCTCTGTCTCTTCCACCACATGAGAATCGCCAACTCCAGGCCTGACCGCTTCACCTTCACTGCGACGCTGAGTGCATGTGCTGGCTTGGGTGAGCTGCGGCGTGGAATGAAAATCCATGCACAAGTTGTTGTTTCTGGATGCCAGTCTTCGTTGCCTGTTGGCAATTCGCTTATTGATATGTATGGGAAATGTCTGAGTGCTACCAGTGCGAGAAGAGTGTTTGAAGAGATGAGTATTATGAATGAAGTATCATGGTGTTCGTTGTTATTTGCTTACACAAGCTCTGGTCTGTTTGATGTTGCGCGTGTAGTTTTTGATGGTATGCCGAAAAAGGTGGAAATTGCATGGAATATTATGATTTCTGGCTATGGGCAATGTGGGGATGTTGAATTGTGTCTGGGTTTGTTCAAGAAAATGCGAGAGGATTCACTCCAGCCGGATCAGTGGACGTTTAGTGCTCTCGTAAATGCATTGTGTGAACTGCAAGAGCCTTCGTATGGATACATGATGCATGGATTTATCATTAAAAGTGGCTGGGATGATGTGATGAAGGTGTTTGAGTCCATAGGAATATTAACCCAGGTATCTTGGAATGCAATGATTGATGCCCATATGAAAATAGGAGATACCCATGAAGCCTTTCTTGTATTTCAGCTGGCACCCGAGAAGAATGTGGTTTCATGGACATCTATGATCACTGGGTATGCAAGAAATGGGCATGGGGAACAAGCTCTTAGCTTCTTTGTCAAGATGATGGAAAATCACATCCAACCAGATGATTTTACATTTGGGGCTGTTCTACATGCATGTTCTAGCTTGGCAACACTAGGGCATGGTAAAATGATCCATGGCAGCATAATCCACTATGGTTTTCATGCTTATGTCGATGTTGGAAATGGCTTAGTGAACATGTATGCCAAGTGTGGAGACATACAAGGATCAAACACTGCATTTAAAGAGATTCTCGGGAAGGATTTGGTTTCTTGGAATGCAATGTTATTTGGATTAGGGATGCATGGACATGCCACCCAAGCTCTAGAGCTTTATGAAGAAATGGTGGCATCTGGTATGAAACCAGATAAGGTGACTTTTATTGGCCTGCTGATGACTTGCAGCCACTCAGGGCTCATAGAGAAAGGTCAGGCTCTTTTTGAATCAATGGTTTCAGTTTATGGGCTCTCCCAAGAAACAGAGCATGTGGTGTGCATGGTGGATTTGCTTGGCCGGGGTGGATACTTGGCACAAGCAAGAGAGTTGGTTGATGAATATTCGAGAACAGGTCGTGCAGAGACCAGTTTGCCTGAGGCTTTACTAGGAGCATGTTTTGCACATAGTGAGGTTAGGATGGGGGCAAATTTGGGGGAATATTTAAAGGTTTTTGAACCTCAAAAAGAGATGAGCTATGTTTTGCTATCCAACCTGTATTGTGTGAGTGGCCAGTGGAAGGAAGCAGAAATGGTTAGGAAGACAATGACAGATCATGGGGTGAAGAAAATGCCCGGTTGTAGCTGGATTGAGGTAAGAAATAAGGTGACAGTTTTTGTAGCCGGGAACCATTCACATCCCTACATGGAAGAGTTGTGTAAGATACTAAACTTCCTCAAATTTGAAATGAGAAATCCATTCTTTTCTGGTTTCAAGAATTGA 1812 43.98 MHSHLFQTTSKIVALAKLGRITSARRLFDEMPHKDTVAWNAMLASYSQLGLHQQALCLFHHMRIANSRPDRFTFTATLSACAGLGELRRGMKIHAQVVVSGCQSSLPVGNSLIDMYGKCLSATSARRVFEEMSIMNEVSWCSLLFAYTSSGLFDVARVVFDGMPKKVEIAWNIMISGYGQCGDVELCLGLFKKMREDSLQPDQWTFSALVNALCELQEPSYGYMMHGFIIKSGWDDVMKVFESIGILTQVSWNAMIDAHMKIGDTHEAFLVFQLAPEKNVVSWTSMITGYARNGHGEQALSFFVKMMENHIQPDDFTFGAVLHACSSLATLGHGKMIHGSIIHYGFHAYVDVGNGLVNMYAKCGDIQGSNTAFKEILGKDLVSWNAMLFGLGMHGHATQALELYEEMVASGMKPDKVTFIGLLMTCSHSGLIEKGQALFESMVSVYGLSQETEHVVCMVDLLGRGGYLAQARELVDEYSRTGRAETSLPEALLGACFAHSEVRMGANLGEYLKVFEPQKEMSYVLLSNLYCVSGQWKEAEMVRKTMTDHGVKKMPGCSWIEVRNKVTVFVAGNHSHPYMEELCKILNFLKFEMRNPFFSGFKN* 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3793981 3795853 + Vvi5g374 Vvi5g374 786516

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g374 603 Pfam E motif 499 561 IPR046848 -
Vvi5g374 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 279 313 IPR002885 -
Vvi5g374 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 380 414 IPR002885 -
Vvi5g374 603 Pfam PPR repeat 138 165 IPR002885 -
Vvi5g374 603 Pfam PPR repeat 110 132 IPR002885 -
Vvi5g374 603 Pfam PPR repeat 12 33 IPR002885 -
Vvi5g374 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 519 553 IPR002885 -
Vvi5g374 603 Pfam PPR repeat family 169 214 IPR002885 -
Vvi5g374 603 Pfam PPR repeat family 278 326 IPR002885 -
Vvi5g374 603 Pfam PPR repeat family 34 82 IPR002885 -
Vvi5g374 603 Pfam PPR repeat family 379 425 IPR002885 -
Vvi5g374 603 Gene3D Tetratricopeptide repeat domain 354 562 IPR011990 GO:0005515
Vvi5g374 603 Gene3D Tetratricopeptide repeat domain 110 220 IPR011990 GO:0005515
Vvi5g374 603 PANTHER BNAC04G08260D PROTEIN 104 240 - -
Vvi5g374 603 PANTHER BNAC04G08260D PROTEIN 8 163 - -
Vvi5g374 603 PANTHER BNAC04G08260D PROTEIN 248 548 - -
Vvi5g374 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 35 69 IPR002885 -
Vvi5g374 603 TIGRFAM PPR: pentatricopeptide repeat domain 382 415 IPR002885 -
Vvi5g374 603 TIGRFAM PPR: pentatricopeptide repeat domain 281 314 IPR002885 -
Vvi5g374 603 TIGRFAM PPR: pentatricopeptide repeat domain 37 70 IPR002885 -
Vvi5g374 603 TIGRFAM PPR: pentatricopeptide repeat domain 250 280 IPR002885 -
Vvi5g374 603 TIGRFAM PPR: pentatricopeptide repeat domain 170 202 IPR002885 -
Vvi5g374 603 Gene3D Tetratricopeptide repeat domain 221 333 IPR011990 GO:0005515
Vvi5g374 603 Gene3D Tetratricopeptide repeat domain 4 104 IPR011990 GO:0005515
Vvi5g374 603 PANTHER - 248 548 - -
Vvi5g374 603 PANTHER - 8 163 - -
Vvi5g374 603 PANTHER - 104 240 - -
Vvi5g374 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 167 201 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g374 - - - vvi:100249490 1218.76
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g374 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018064 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 5