Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g375 ATGGACTGCAATAAAGAAGAGGCTGTCAGGGCCAAGGGGCTTGCTGAAAAGAAGATGCAAAACAAGGATTTTGTGGGGGCTCGGAAGATTGCAATTAAAGCCCAACAACTCTATCCTGATCTGGAAAATATTTCCCAGATGCTCACTGTGTGTGATGTACACTGCTCTGCGGAACACAAATTGATTGGGAATGAGATTGACTGGTATGCACAAAGAGTTCTTTTGGACCGGGAAAAACGGTCCTTGCATGACATGAGACGTAAAGCTTGCATGAAACCTAAAGCAGCACATCAGACCCAACCGCGTGCAAATAAGAATGTGAATTTTGGAAGACAATCTGGGGTTCAAAACAGTTCTATGAACAATGCTGCTACAACATATGCAGGTCCTGCATTCCCCCAACAGAAGCCAGTCCCTAATCAGGATGCTCATAAAGTGGGTCCACAGAGTACTTTTCAGAAACCTGCTTCCAATGTGGGATTTCAAGGAAAATTTGGTGCTAAATCCCCAGGAAAGGTGAACGGTAAGAAAAGAAAGAAGCAGGAAGTGGAATCCAGTGAAAGTTGCGACACTGGAAGCAGCTCTGACACTGAAGAATTAGTTATGGAAGAGGATGATGATCTCCCAGCTAAACAGAATTATGGACAGAAGAGCGAGGATGTATCATTGAAAGAAAACATATGCAAAATCAATAAGCAGGCTGGTGCAGCTGCTGATGTAGAAGAAGATAAGAAGGACTCGGGGCAAAAAGGAACTGGCTCTTTTGATGAGAGCTTGCCTAATGGAACCAAAGAGACTAAGAAAGACAATGGAAAGGAAACAGTGACGGATGATGCATGTAAGAGAAAGTTCTATGAATACCCCGATCCAGATTTTAATGACTTTGACAAGGATAGGAAAGAAGAATGTTTTACAGTTGGGCAGACATGGGCTCTGCGGATAACCTGGTTGGAGCCTGACCCTAGTGATGAGGCTGAAATTGAATGGGTTAGTGAAGATTTGCCATATTCTTGTGGTAATTTCAAACGTGGGAAGTCCGAAAACACTGGAGATCGTCTTATGTTCTCTCATTTAGTTTCTTGGGAAAAGGACCGCAGTAGAGATGCTTACAAGATACATCCAAGAAAAGGAGAGACCTGGGCCCTTTTTAAGAACTGGGATATAAAATGGAGCTCAGACCCAGAGAGTCATAGGAAGTATGAGTTTGAATATGTGGAAGTCTTGTCAGAATATGATGAGAATGTTGGAATATCAGTTGTGTACTTGAGTAAGTTAAAAGGTTTTGCCTGTCTTTTTTGTCGAATACTGAAGCAAGGAATTGATTCAATCTTGATCCCACCAAGTGAACTACTTAGGTTCTCCCACAGGATTCCTTCTTTTAAACTGACTGGTGAGGAAAGGCAAGATGTTCCAAGAGGGTCTCTTGAACTTGACCCTGCGTCTCTGCCTGCCAACGTTGAAGAAATTCCTGTTCCTGAAGAAGATTTGAAGATGGAGGCTAGTAATGCAAATTCTAATGGTTCTAATGGCAATCCTGATGATATTCTCAAAGACCATAGTAGTGATCCAGCTTCTGTAGTAGCTTCAACTCCAGAAGCTTATGAAATTCCTGAGCCAGACTTCTGCAACTTTGATGCTGAGAAATCCCCAGAAAAGTTTCAAGTTGGTCAGATTTGGGCCTTGTACAGTGATGAGGATGGTTTGCCAAAGTACTATTCCTGCTCACCTCCAAATGACATGATTCAGTGGCTTGACAAAAAGATGTTGACCACGTGTGGGAGATTTAAGATTAAGAAGGGTAAGCCCCAGACCTATACTAGTGAGGTTTGGGCATTGTACAAGAACTGGAATGCTGAAATGACATGTTCTGACTTGGAGAACTGTGAATATGACATAGTTGAAGTTCTAGATGAAAATGATTTGTGGATTGAAGTTTTGCTTTTAGAGCGAGTGGAGGGTTACAATGCAGTTTTCAAGTCTCAAGTAGAAGGAAGATTACCTTTCAGTATGAAGATTCCTCGGGTTGAATTGCTTAGGTTCTCTCATCAAATTCCTGCTTTCCATCTGACGGAAGAGAGAGATGGTGCCTTGAAAGGAAACTTAGAGCTTGATCCTGCATCATTGCCAATTCTTTTATTTTGTTCAAACTGA 2151 42.07 MDCNKEEAVRAKGLAEKKMQNKDFVGARKIAIKAQQLYPDLENISQMLTVCDVHCSAEHKLIGNEIDWYAQRVLLDREKRSLHDMRRKACMKPKAAHQTQPRANKNVNFGRQSGVQNSSMNNAATTYAGPAFPQQKPVPNQDAHKVGPQSTFQKPASNVGFQGKFGAKSPGKVNGKKRKKQEVESSESCDTGSSSDTEELVMEEDDDLPAKQNYGQKSEDVSLKENICKINKQAGAAADVEEDKKDSGQKGTGSFDESLPNGTKETKKDNGKETVTDDACKRKFYEYPDPDFNDFDKDRKEECFTVGQTWALRITWLEPDPSDEAEIEWVSEDLPYSCGNFKRGKSENTGDRLMFSHLVSWEKDRSRDAYKIHPRKGETWALFKNWDIKWSSDPESHRKYEFEYVEVLSEYDENVGISVVYLSKLKGFACLFCRILKQGIDSILIPPSELLRFSHRIPSFKLTGEERQDVPRGSLELDPASLPANVEEIPVPEEDLKMEASNANSNGSNGNPDDILKDHSSDPASVVASTPEAYEIPEPDFCNFDAEKSPEKFQVGQIWALYSDEDGLPKYYSCSPPNDMIQWLDKKMLTTCGRFKIKKGKPQTYTSEVWALYKNWNAEMTCSDLENCEYDIVEVLDENDLWIEVLLLERVEGYNAVFKSQVEGRLPFSMKIPRVELLRFSHQIPAFHLTEERDGALKGNLELDPASLPILLFCSN* 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3803511 3809392 + Vvi5g375 Vvi5g375 786517

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g375 716 MobiDBLite consensus disorder prediction 465 484 - -
Vvi5g375 716 MobiDBLite consensus disorder prediction 234 273 - -
Vvi5g375 716 Pfam Domain of unknown function (DUF3444) 607 692 IPR024593 -
Vvi5g375 716 Pfam Domain of unknown function (DUF3444) 532 573 IPR024593 -
Vvi5g375 716 Pfam Domain of unknown function (DUF3444) 284 312 IPR024593 -
Vvi5g375 716 Pfam Domain of unknown function (DUF3444) 312 466 IPR024593 -
Vvi5g375 716 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 1 70 - -
Vvi5g375 716 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 312 489 - -
Vvi5g375 716 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 70 312 - -
Vvi5g375 716 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 512 709 - -
Vvi5g375 716 MobiDBLite consensus disorder prediction 117 221 - -
Vvi5g375 716 MobiDBLite consensus disorder prediction 500 530 - -
Vvi5g375 716 MobiDBLite consensus disorder prediction 500 514 - -
Vvi5g375 716 PANTHER - 70 312 - -
Vvi5g375 716 PANTHER - 312 489 - -
Vvi5g375 716 PANTHER - 1 70 - -
Vvi5g375 716 PANTHER - 512 709 - -
Vvi5g375 716 MobiDBLite consensus disorder prediction 236 251 - -
Vvi5g375 716 MobiDBLite consensus disorder prediction 144 158 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g375 - - - vvi:100244334 1087.79
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi5g375 Vvi14g366 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g375 . . . . Bpe04g01172 . . . Cmo08g01173 Cmo17g00292 . . . . . . . . . . . . . . Cla06g00511 Cam06g0550 Cec06g0550 Cco06g0557 Clacu06g0536 Cmu06g0536 Cre06g1304 . . . . . . Chy11g01464 . . . . . . . . . . . . Cma08g01199 Cma17g00302 Car08g01076 Car17g00278 Cpe12g00255 Cpe17g00099 Bhi12g01747 . . . . . . . . . . . . . Lsi09g01390 . . Cme11g01970
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004670 2 2 0 1 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 4 1 42