Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g376 ATGTTTAAATTGATCTCTTTTAAATTGGCTCCCTTTTCCCTCCAAAAATCAACCTCTATATGTCCCCCACTCTCCCTCTTTTCCCTCCAATCCTCTCTCTCTCTCCTCTCCACTTCCACTTTCACTTTCCCTCCACTCTCCTCTCTCCTCTCACTACATTCTCCCCTTTCCTCTGATAAATCGAGATGGGTTCCCTTGGAGATAGTGATGACGAAATCGACGACACCCAACCTCTTGCTGATATTTCCGATTCCGAAACCCAAAACTTTGATGCTCTGTCTTCTCCCTCTTCGTTGTCTGGTGAGAAAATCAAAGATTGGAATGCTGATGCAGTGCAATTTCTACAAAATACTGTACCTTTTGATGACACTGTTCCGCTTGAAGACGCATTTGAAACCCAATTGTTGCAATGTTAGACCTAATTTTATTAAGTGCACTATGATAAGTACCTGCTGTTCTAAACTTCACTTTTTTTTTCAATTTTCTTGTTACTCAGGATCTGTTCCAAGGGGGTTTACTTCAGTTCGTGCTGCAGCTTTGCGGGCCTCTGGTTTAGCAGCTCGTGCTATGACTCTTAATGGAACCAAGAGTGGGCCTTTGAAACAAAATGATAAGGAAAATAAGATTTCTTCTATAAGAGGCCAATCAGCAGTTGGGGCAGAAGTTGCTCCAGAAAATTGTTTTGGGGAATATAATGAGGGATTAAGGAACGAAACCAAATGCAGGGTTAGTAGATCTACAGTGAGAAAACTTTTTACTGAGGATACGTTTGCTGAGAAAAGCAGATCCACTAACAACATTCATAGCAATGATGAAGGAACAGACTTGTCTCAATTGCTTGCCTGCGGTAACAAGTCAGCAGGGTTGAGCTATGTTGACTCTCAAGAGCCTGAAGAGGCATCCCAAGCCAATGCACTTGATTTTGTGGACAGGTTTCTTCAAGTTAATATGCTGGAGTTTGATCAAGAAGTTGATCATGGGAAGACTACCAAAACAAAATCAATTACTGTCTCAAGTGCAAAAGGGCCTCAAAGTTTGGCCAAGGCATCTAATCGTAGAAACACGGTTGGGCAATCGGAGATTTTTGACTGGGATGATAACCGTGAGGATGAAGGTGGCGGAGAATTTTTCTGTCATAGAAAGGAAGAATTATTTGATCACAAACATCATGGGCGGATATCTTCTTCTGAACCTCGGAAGACCAGGCAGGCTGACTTGAAAGGAAGCCAAGTGGATGAGTTCAGGAATAAGGAAGAGAAATTGAAGATCCACCATAAAATAATGAATTTTTTAAATGCAGAATCCTCAGGAGGAGAGTTTGAAGCCACTGGTGCTGACATGGATGTGCCTGACATGCCAAATGTAGGTTTTGACACTCAAATGGCTGCTGAAGCTATGGAAGCCTTATTTTATGGGTCATCCCTTAATAATGGTGATGTTCATGAGGCTTGTCAAGGTAACCATAATTCCAAGGGTTTGCCCAAGAGGGAGAGGAAGAATTCAGCTTGTACTAAAGAGGATTCATTTCAGAAGAGGGCACATCCTCTGGATTCAGGAGTAATTACAAGACAATCCAAGAAAATGAAGGGGATTGGAGCCAGACTTAGTAAAGAATCTTCAGGTTGCGCACGCTCTAAGAATGTCAGGGAGCAGATCGATGTGGAGCCAGTAAAAGCAAAACCAAAACGGACCAAGTCAAATTCTCAGGAACGCTTTGCCTCCAGGGGAAGTGAAAATGTGGGCAAAAACCCTTCTAAAGTCACCAGGAAAAGAAAAGCAGAAGGAACCTTGGAAAGAAGCCATATTGATGAGGTTGAAGGATGTCATGGCCTAGCAACATCACATAGTCTTATTTCAGTTAAGAAACGGGGTTTACAAGAGGAGCTTGGTACTTTTACACCAGTTGCTTGTCGAACTAGGCATCGCATGGTTGTAAATCAGTTTGAAAGAGCTAAGATCGCATCAAATGATTCTGGTGAAGAAATAAATAATCGGAGAAAGGCTGGTCCACTTAAAGACAGAAGAAAAAGGAGCAAAGCTGTTGATGTCTGTAAGGTGTCAGGTGATAAAGAGAGATTGTCTACATCTGGTTCCAATGGCTCTGGCAAACTTCAGTCTGACAAACTAAGTCATCATGAGCAATCAGATTCAAAGTTAACTGCTATATCTAATGGTGGCAAAATGGATGCTTTGAGCTGTCCTAAACAAAGCAGAACTCATAGAAACTTAGAAGGAAATGCTGGGTTAAGGGAGATGTGTAAACCCTCTGGTTCAGTATGTACTACCCCAGTTAACTCTGTGACACCTACAAATGCTGCATCACCAGTTTGTATGGGTAACGAATATGTCAAGCAATCTTGCAAGAAGAACCTAAGGACATCCCTTTTGAAAGAAATAAATAACTTAACTGACACTGGACCAGGGCCTACTTCTGCAGTAAAAGATTCTAGGAGGAGAAGAGAAATATCGAACGTTCGAGTCTTATTTAGCCAACACTTGGATGATGATATAATTAAGCAGCAGAAAAAGATTTTGACCCGCCTGGGAGTTTCTGTAGCTTCCTCTATTTCAGATGCCACACACTTTATAACAGATGCATTTGTACGGACAAGGAATATGTTAGAAGCTATTGCATATGGCAAACCAGTGGTGACACATCTATGGCTTGAGAGCTGTGTGCAAGCTAGATGCTTTATTGATGAAAAAGGCTACATACTGAGGGATGCGAAAAAGGAAAAGGAGCTTGGCTTTAGCATGCCAGTTTCATTGGCACGTGCATGCCAACATCCTCTTTTACAGGCAATTTCTCAATCTTATTTTATCTTAATCACTCCAAACACAAAGCCTGGTAAAGAAATAATAGCAAGCTTGGTTAAGGCAGTTGATGGTCAGCCTGTGGAGAGGATAGGCAGATCTGTGTTGAAGGATGGCAAATTTCCAGATGATCTGTTGATTTTATCATGTGATGAAGATTATGCAGTCTGTGAGCCTTATCTCGAAAAAGGAGCAGCTGTTTACAGTTCAGAGTTGCTACTGAATGGGATAGTCACTCAGAAGCTGGAGTATGAAAGACATCAGCTGTTCGTGGATAATGTAAAAAGAACCAGATCTACGATATGGATGAGAAAAGATGGTAATCACTTCCTTCCTGTGACAAAACCTAAATAA 3168 41.57 MFKLISFKLAPFSLQKSTSICPPLSLFSLQSSLSLLSTSTFTFPPLSSLLSLHSPLSSDKSRWVPLEIVMTKSTTPNLLLIFPIPKPKTLMLCLLPLRCLVRKSKIGMLMQCNFYKILYLLMTLFRLKTHLKPNCCNVRPNFIKCTMISTCCSKLHFFFQFSCYSGSVPRGFTSVRAAALRASGLAARAMTLNGTKSGPLKQNDKENKISSIRGQSAVGAEVAPENCFGEYNEGLRNETKCRVSRSTVRKLFTEDTFAEKSRSTNNIHSNDEGTDLSQLLACGNKSAGLSYVDSQEPEEASQANALDFVDRFLQVNMLEFDQEVDHGKTTKTKSITVSSAKGPQSLAKASNRRNTVGQSEIFDWDDNREDEGGGEFFCHRKEELFDHKHHGRISSSEPRKTRQADLKGSQVDEFRNKEEKLKIHHKIMNFLNAESSGGEFEATGADMDVPDMPNVGFDTQMAAEAMEALFYGSSLNNGDVHEACQGNHNSKGLPKRERKNSACTKEDSFQKRAHPLDSGVITRQSKKMKGIGARLSKESSGCARSKNVREQIDVEPVKAKPKRTKSNSQERFASRGSENVGKNPSKVTRKRKAEGTLERSHIDEVEGCHGLATSHSLISVKKRGLQEELGTFTPVACRTRHRMVVNQFERAKIASNDSGEEINNRRKAGPLKDRRKRSKAVDVCKVSGDKERLSTSGSNGSGKLQSDKLSHHEQSDSKLTAISNGGKMDALSCPKQSRTHRNLEGNAGLREMCKPSGSVCTTPVNSVTPTNAASPVCMGNEYVKQSCKKNLRTSLLKEINNLTDTGPGPTSAVKDSRRRREISNVRVLFSQHLDDDIIKQQKKILTRLGVSVASSISDATHFITDAFVRTRNMLEAIAYGKPVVTHLWLESCVQARCFIDEKGYILRDAKKEKELGFSMPVSLARACQHPLLQAISQSYFILITPNTKPGKEIIASLVKAVDGQPVERIGRSVLKDGKFPDDLLILSCDEDYAVCEPYLEKGAAVYSSELLLNGIVTQKLEYERHQLFVDNVKRTRSTIWMRKDGNHFLPVTKPK* 1056
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3809767 3819769 + Vvi5g376 Vvi5g376 786518

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g376 1055 CDD BRCT_MDC1_rpt1 825 899 - -
Vvi5g376 1055 MobiDBLite consensus disorder prediction 332 355 - -
Vvi5g376 1055 MobiDBLite consensus disorder prediction 483 601 - -
Vvi5g376 1055 MobiDBLite consensus disorder prediction 491 513 - -
Vvi5g376 1055 Pfam Regulator of Ty1 transposition protein 107 BRCT domain 814 906 IPR001357 -
Vvi5g376 1055 ProSiteProfiles BRCT domain profile. 817 906 IPR001357 -
Vvi5g376 1055 MobiDBLite consensus disorder prediction 548 569 - -
Vvi5g376 1055 PANTHER BRCT DOMAIN-CONTAINING PROTEIN-RELATED 753 1035 - -
Vvi5g376 1055 PANTHER BRCT DOMAIN-CONTAINING PROTEIN-RELATED 247 755 - -
Vvi5g376 1055 CDD BRCT_PAXIP1_rpt6_like 941 1021 - -
Vvi5g376 1055 Gene3D BRCT domain 812 930 IPR036420 -
Vvi5g376 1055 PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN 247 755 - -
Vvi5g376 1055 PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN 753 1035 - -
Vvi5g376 1055 SUPERFAMILY BRCT domain 813 922 IPR036420 -
Vvi5g376 1055 MobiDBLite consensus disorder prediction 389 413 - -
Vvi5g376 1055 Gene3D BRCT domain 931 1035 IPR036420 -
Vvi5g376 1055 MobiDBLite consensus disorder prediction 675 689 - -
Vvi5g376 1055 SMART BRCT_7 820 896 IPR001357 -
Vvi5g376 1055 MobiDBLite consensus disorder prediction 691 705 - -
Vvi5g376 1055 MobiDBLite consensus disorder prediction 657 739 - -
Vvi5g376 1055 MobiDBLite consensus disorder prediction 584 601 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g376 K20780 MDC1; mediator of DNA damage checkpoint protein 1 - vvi:100266667 1065.83
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g376 . Blo12g00044 Bda03g01216 . . . Bma04g01089 . Cmo08g01172 Cmo17g00291 . . . . . . . . . . . . . . . . . . . . . Cone14ag0793 Cone15ag0794 . . . . Chy11g01463 . . . . . . . . . . . . . . Car08g01075 Car17g00277 Cpe12g00254 Cpe17g00100 Bhi12g01748 . . . . . . . . . . . . . . . . Cme11g01969
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010432 1 1 1 1 1 1 2 0 1 1 0 1 0 1 1 2 1 3 2 1 1 1 1 1 1 0 1 2 1 1 32