Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g377 ATGCACACTGCCCAGACTGTAACTGCCGGGGCTTCTGAGGCTTCTTCTCCACAGGCAAATCTCCAAATTCTGGAACGCACAAATGAAGTTGTTATAGATTCAGGACCAAGGGAGAAGCGACCAGATCTTTCACTTCAAATACCCCCTAGATCTGTAAATTTTGGCAATAGCAGGAGTGGAAAAGGTTTACTCCAATCTCAAGGATCCGTAAAAGGTATTTCACCTTCAAAGGGCTTGTTACGGGGTTTAAGCTTCAAAAAAAAGACTGCTTTACCTGATGGTGAGAGAAGCTCCCTCCTCAACTCAGATAGCAAGCCAACTGCAGAAAGTCCTAGGTTGTCCAACTTCATGGATGTTTTTAATTGGAAAAGATCTACTTCTCTTCCTGTTTCACATGCATCAAACTTGTCCCCTTCAGTTTCTACACCTACTTCAGCAAGGCCGTATAATGAACGTCCCAGGTCACATAAAGGGCCAGTTCATATGGTGGATCCTGTGGTCTCAAGGTCCCTGTCCATACCTGGTCGAAATGTTGTCATTGTAAGATCTGTATCTTTTGCTACTCGACATGAACAGGTTCAGACTGAATCTAGTGATGATCAAATTACTCCCGTTCCTATGCAAAATGAAGACGAAGAGATACCTGAAGAGGAGGCAGTTTGCAGAATCTGTTTGGAAGTTTGTGAAGAAGGAAACACACTCAAGATGGAATGCAGTTGCAAAGGTGCCCTCAGACTTTTACATGAAGACTGTGCGATTAAGTGGTTCACTACAAAAGGAAATAAGACTTGCGATGTATGTAGGCAGGAGGTTCAGAACTTACCTGTAACCTTGCTTCGGGTGCCAACTTCTGCTCAAAGGGATAACAGACAGGCACATAATCAACAGAGTTTAAATTCGCGATCAGTAAGTGTTTGGCAGGACTTTGTGGTTCTTGTCTTGATTAGCACGATATGCTATTTCTTCTTCCTTGAGCAGCTCCTGATTCATGACATGAAGACTCAAGCAATTGTAGTTGCAGCACCATTTTCTTTTACTTTGGGTCTTTTGGCATCTATTTTTGCAATTATCCTAGCAATCAAGGAGTATATATGGACATATGCTGCTCTTGAGTTTGCGCTTGTGGCCATAATCGTCCATCTTTTCTATAGTTTGCTTCATCTGAAGGCGGTTTATGCCATAATGCTTTCTGCAGTTATGGGTTTCGGCATAGCTATGAGCCTCAATTCATTGTACATTCAATTTTTTACTTGGCGGTTTCAGATTACACAGAACTCCAACCCTGTATGA 1290 42.48 MHTAQTVTAGASEASSPQANLQILERTNEVVIDSGPREKRPDLSLQIPPRSVNFGNSRSGKGLLQSQGSVKGISPSKGLLRGLSFKKKTALPDGERSSLLNSDSKPTAESPRLSNFMDVFNWKRSTSLPVSHASNLSPSVSTPTSARPYNERPRSHKGPVHMVDPVVSRSLSIPGRNVVIVRSVSFATRHEQVQTESSDDQITPVPMQNEDEEIPEEEAVCRICLEVCEEGNTLKMECSCKGALRLLHEDCAIKWFTTKGNKTCDVCRQEVQNLPVTLLRVPTSAQRDNRQAHNQQSLNSRSVSVWQDFVVLVLISTICYFFFLEQLLIHDMKTQAIVVAAPFSFTLGLLASIFAIILAIKEYIWTYAALEFALVAIIVHLFYSLLHLKAVYAIMLSAVMGFGIAMSLNSLYIQFFTWRFQITQNSNPV* 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3820376 3827378 - Vvi5g377 Vvi5g377 786519

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g377 429 ProSiteProfiles Zinc finger RING-CH-type profile. 213 274 IPR011016 GO:0008270
Vvi5g377 429 MobiDBLite consensus disorder prediction 49 73 - -
Vvi5g377 429 PANTHER OS02G0165000 PROTEIN 1 429 - -
Vvi5g377 429 MobiDBLite consensus disorder prediction 91 111 - -
Vvi5g377 429 CDD RING_CH-C4HC3_MARCH 221 268 - -
Vvi5g377 429 SMART ringv_2 220 268 IPR011016 GO:0008270
Vvi5g377 429 Pfam RING-variant domain 221 267 IPR011016 GO:0008270
Vvi5g377 429 MobiDBLite consensus disorder prediction 32 78 - -
Vvi5g377 429 MobiDBLite consensus disorder prediction 191 205 - -
Vvi5g377 429 MobiDBLite consensus disorder prediction 129 161 - -
Vvi5g377 429 SUPERFAMILY RING/U-box 217 271 - -
Vvi5g377 429 MobiDBLite consensus disorder prediction 95 111 - -
Vvi5g377 429 MobiDBLite consensus disorder prediction 129 149 - -
Vvi5g377 429 MobiDBLite consensus disorder prediction 191 212 - -
Vvi5g377 429 ProSiteProfiles Zinc finger RING-type profile. 221 268 IPR001841 -
Vvi5g377 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 206 275 IPR013083 -
Vvi5g377 429 PANTHER ZINC FINGER PROTEIN 1 429 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g377 - - - vvi:100259554 840.491
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g377 . . . . . . . . Cmo08g01171 Cmo17g00289 . . . . . . . . . . . . . . Cla06g00513 Cam06g0551 Cec06g0551 Cco06g0558 Clacu06g0537 Cmu06g0537 Cre06g1305 Cone14ag0794 Cone15ag0795 . . . . Chy11g01462 . . . . . . . . . . . . Cma08g01198 Cma17g00301 Car08g01074 Car17g00276 Cpe12g00253 Cpe17g00101 Bhi12g01749 . . . . . . . . . . . . . Lsi09g01389 . . Cme11g01968
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005455 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 4 1 40