Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g379 ATGACTGTTTTGTTCGGGGCTGTGATGCATCAGTGCTATTGGATTCAACTAAAAATACGACTGCTTAGAAAGAAGCGTTACCGAACCGGTCATTGTCAGGATACGATGTTATTGATGATATCAAAGCTAAAATTGAAGAAGAGTGTCCTGGAGTGGTTTCATGTGCTGATATCCTGGCTCTGGCTGCTCGGGATGCTGTTTCGTACCAAACCCATGTGGCAGGTTCTAACCGGGAGGAAAGACGGAAGAGTTTCGCTTGCCTCGGATATCCCTGGCAACTTACCGCCACCCACAGCAGACTTCACATCTCTCCAGCAGCTCTTTGCAAGCAAAGGGCTAGACGTTATGGATCTTGTAGCCTTATCAGGGGCACATACAATTGGAGTGTCACATTGTAGTGTGATTGCAAGGAGGCTATACAATTTCACAGGAAAAGGGGATGCGGATCCTTCACTCGAACCAGATTACGCAAACAAGCTATGGAGGGAGTGTGGAAGCCCTCTTAATCCATCAACAACTGTAGACATGGACCCTGACCAGAGCTCACTCTCCTTTGACAGCCATTACTTCAAGATTGTCAGCCAAAACAAGGGCCTGTTTCAGTCTGATGCAACGCTGCTCACCAACCCCCAGTCGGCTCAGATGGTAGAAATGCTACAGCATGGCCGATTATTTTTTGTGCGCTTTGCTCAATCGATGAAGAAGATGGGAGGTATTGGTGTACTTACTGGAGATGAAGGAGAGATTCGGAAGCACTGTAGTCTTGTTAATGCCTGA 777 47.23 MTVLFGAVMHQCYWIQLKIRLLRKKRYRTGHCQDTMLLMISKLKLKKSVLEWFHVLISWLWLLGMLFRTKPMWQVLTGRKDGRVSLASDIPGNLPPPTADFTSLQQLFASKGLDVMDLVALSGAHTIGVSHCSVIARRLYNFTGKGDADPSLEPDYANKLWRECGSPLNPSTTVDMDPDQSSLSFDSHYFKIVSQNKGLFQSDATLLTNPQSAQMVEMLQHGRLFFVRFAQSMKKMGGIGVLTGDEGEIRKHCSLVNA* 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3842707 3844012 + Vvi5g379 Vvi5g379 786521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g379 258 Gene3D - 68 257 - -
Vvi5g379 258 PANTHER PEROXIDASE 25-RELATED 68 257 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi5g379 258 Gene3D Peroxidase, domain 2 95 237 - -
Vvi5g379 258 SUPERFAMILY Heme-dependent peroxidases 69 257 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vvi5g379 258 Pfam Peroxidase 70 219 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi5g379 258 PANTHER PEROXIDASE 68 257 - -
Vvi5g379 258 ProSitePatterns Peroxidases proximal heme-ligand signature. 117 127 IPR019793 -
Vvi5g379 258 ProSiteProfiles Plant heme peroxidase family profile. 71 257 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi5g379 258 PRINTS Plant peroxidase signature 69 84 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi5g379 258 PRINTS Plant peroxidase signature 116 128 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi5g379 258 PRINTS Plant peroxidase signature 176 191 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi5g379 258 PRINTS Plant peroxidase signature 192 209 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi5g379 258 PRINTS Plant peroxidase signature 231 244 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi5g379 258 PRINTS Haem peroxidase superfamily signature 69 81 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi5g379 258 PRINTS Haem peroxidase superfamily signature 117 132 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi5g379 258 PRINTS Haem peroxidase superfamily signature 178 193 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g379 K00430 - egr:104414959 247.284