Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g381 ATGGCTCTCTGTACGCTCTCATTTCCTGCCCATTTTAGCCAGGCTGCTGCTTCAAATCCTCAGAGACTTACTCCTCAGTGTTCCCATTTGTTCTTGGGGGTGGATTTGCAGTGCCAATCCCAGCAAAGGAGTAAGGCCAGGAAAAGGCCAAATGGGGTTTGTGCATCACTTTCGGATAGGGAGGAGTATCATTCCCAGAGACCACCAACTCCTCTCCTGGACACTATCAATTATCCAATTCACATGAAAAATCTGTCTGTCAAGGAGCTGAAACAACTCGCAGATGAACTAAGGTCTGATGTTGTCTTCAATGTTTCCAAAACTGGGGGTCACTTGGGCTCCAGCCTCGGGGTTGTGGAGCTCACTGTGGCTCTTCATTATGTCTTCAATGCCCCTCAAGACAGGATACTATGGGATGTTGGTCATCAGTCTTACCCACACAAAATTCTAACTGGGAGAAGAGATCAAATGCATACCATGAGGCAAACAGATGGGTTAGCGGGATTCACCAAGCGCTCGGAGAGTGAATATGACTGCTTTGGAACCGGCCACAGTTCTACTACCATCTCAGCAGGCTTGGGAATGGCGGTCGGCCGGGATCTAAAAGGAAAAAACAACAACGTTATTGCTGTCATAGGTGATGGAGCCATGACTGCAGGGCAAGCTTATGAAGCAATGAACAATGCTGGGTACCTGGATTCTGACATGATTGTTATCCTTAATGACAACAAGCAGGTTTCTTTACCCACTGCTACTCTAGATGGGCCCATACCACCTGTAGGAGCTTTGAGCAGTGCTCTTAGTAGGTTACAATCAAACAGACCTCTTAGAGAATTACGAGAGGTTGCCAAGGGCGTTACCAAACAGATTGGCGGACCGATGCATGAATTGGCTGCAAAAGTTGATGAATATGCTCGTGGGATGATCAGTGGTTCTGGATCAACACTTTTTGAAGAGCTTGGACTCTATTATATAGGTCCTGTTGATGGCCACAACATAGATGACCTTGTTGCCATTCTCAAGGAGGTTAAGAGTACCAAGACAACAGGTCCAGTTCTGATCCATGTTGTCACAGAGAAAGGCCGCGGATATCCATATGCTGAGAAAGCTGCAGATAAGTACCATGGAGTGACCAAGTTCGATCCTGCTACTGGAAAACAATTCAAATCCAGTGCTCCTACTCAGTCCTACACAACATATTTTGCAGAGGCTTTGATTGCAGAAGCAGAGGTGGACAAGGATATTGTTGCAATTCATGCAGCAATGGGGGGTGGAACGGGCTTGAATCTCTTCCATCGCCGGTTCCCCACACGATGCTTTGATGTTGGGATAGCAGAACAGCATGCTGTTACCTTTGCTGCTGGTCTAGCCTGTGAAGGCATTAAACCTTTTTGTGCAATCTACTCATCTTTCATGCAGAGAGCTTATGACCAGGTGGTGCATGATGTAGATTTGCAGAAGCTGCCAGTGAAATTTGCAATGGACAGAGCTGGGCTGGTTGGAGCAGATGGCCCAACACATTGCGGAGCTTTTGATGTCACTTTCATGGCTTGCCTTCCAAACATGGTGGTGATGGCTCCTGCTGATGAGGCCGAGCTTTTTCACATGGTGGCCACAGCTGCTGCCATAGATGACAGGCCCAGTTGTTTCCGGTACCCAAGAGGAAATGGGGTGGGTGTTGAACTGCCACCAGGGAACAAAGGCATTCCTATTGAGGTTGGAAGGGGCCGAATATTGATTGAGGGGGAGAGAGTTGCACTCTTGGGCTATGGAACAGCAGTACAGAGCTGTTTGGTTGCGTCTTCTTTGCTGGAACAACATGGCTTACGAATAACAGTCGCAGATGCCCGCTTCTGCAAACCATTGGACCATGCTCTTATTCGTAGCCTAGCAAAATCACATGAAGTTTTGATTACAGTAGAAGAAGGGTCAATTGGTGGTTTTGGGTCTCATGTTGCTCAGTTTTTGGCCCTTAATGGTCTTCTTGATGGCACAACAAAGTGGAGTCCCATGGTTCTTCCTGACCGGTACATAGACCATGGAGCGCCAGCAGACCAGTTGGCCATGGCGGGTCTGACACCATCTCATATTGCAGCAACAGTATTCAATATACTTGGACAAACAAGGGAGGCCCTGGAGATCATGTTATAG 2151 47.7 MALCTLSFPAHFSQAAASNPQRLTPQCSHLFLGVDLQCQSQQRSKARKRPNGVCASLSDREEYHSQRPPTPLLDTINYPIHMKNLSVKELKQLADELRSDVVFNVSKTGGHLGSSLGVVELTVALHYVFNAPQDRILWDVGHQSYPHKILTGRRDQMHTMRQTDGLAGFTKRSESEYDCFGTGHSSTTISAGLGMAVGRDLKGKNNNVIAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNIDDLVAILKEVKSTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVTKFDPATGKQFKSSAPTQSYTTYFAEALIAEAEVDKDIVAIHAAMGGGTGLNLFHRRFPTRCFDVGIAEQHAVTFAAGLACEGIKPFCAIYSSFMQRAYDQVVHDVDLQKLPVKFAMDRAGLVGADGPTHCGAFDVTFMACLPNMVVMAPADEAELFHMVATAAAIDDRPSCFRYPRGNGVGVELPPGNKGIPIEVGRGRILIEGERVALLGYGTAVQSCLVASSLLEQHGLRITVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVAQFLALNGLLDGTTKWSPMVLPDRYIDHGAPADQLAMAGLTPSHIAATVFNILGQTREALEIML* 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3851154 3856278 - Vvi5g381 Vvi5g381 786523

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g381 716 PANTHER BNAA01G35430D PROTEIN 1 712 - -
Vvi5g381 716 CDD TPP_PYR_DXS_TK_like 401 554 - -
Vvi5g381 716 Gene3D - 574 705 IPR009014 GO:0003824
Vvi5g381 716 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 70 457 IPR029061 -
Vvi5g381 716 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 394 583 IPR029061 -
Vvi5g381 716 SUPERFAMILY TK C-terminal domain-like 569 705 IPR009014 GO:0003824
Vvi5g381 716 Pfam Transketolase, pyrimidine binding domain 396 556 IPR005475 -
Vvi5g381 716 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 72 706 IPR005477 GO:0008661|GO:0016114
Vvi5g381 716 Pfam Transketolase, C-terminal domain 574 697 IPR033248 -
Vvi5g381 716 ProSitePatterns Transketolase signature 1. 98 117 IPR005474 -
Vvi5g381 716 ProSitePatterns Transketolase signature 2. 501 517 IPR020826 -
Vvi5g381 716 TIGRFAM dxs: 1-deoxy-D-xylulose-5-phosphate synthase 75 705 IPR005477 GO:0008661|GO:0016114
Vvi5g381 716 CDD TPP_DXS 109 364 IPR005477 GO:0008661|GO:0016114
Vvi5g381 716 SMART Transket_pyr_3 395 560 IPR005475 -
Vvi5g381 716 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 1 712 IPR005477 GO:0008661|GO:0016114
Vvi5g381 716 Gene3D - 394 564 - -
Vvi5g381 716 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 73 358 IPR005477 GO:0008661|GO:0016114
Vvi5g381 716 Gene3D - 66 367 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g381 K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] - vvi:100249323 1435.62
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g381 . . . . . Bpe14g01154 . . Cmo08g01169 Cmo17g00285 . . . . . . . . . . . . . . Cla06g00518 Cam06g0557 Cec06g0557 Cco06g0564 Clacu06g0545 Cmu06g0542 Cre06g1310 . . Cone7ag0185 Cone4ag0181 . . Chy11g01457 . Blo02g00573 . . . . . . . . . . Cma08g01196 Cma17g00297 Car08g01072 Car17g00273 Cpe12g00249 Cpe17g00103 Bhi12g01753 . . . . . . . . . . . . . Lsi09g01384 . . Cme11g01961
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000430 4 7 2 1 2 4 3 4 3 4 4 4 3 4 4 4 4 5 5 4 3 3 4 3 4 4 5 6 10 4 121