Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g382 ATGGTAATAACTTGCCACCGCTTCTCTCACTCGGCCATCAAGAAGCCCTTTTGTGAAGTTGCCCTCCAGACGAGAGAATCCCTAAAAAGGCCCTATTTTCCTCTGCCACTCTCAATCCTCCCAGGGATGGGTGACAAGAAGAAGAAGGCTGCTTCAATATTCATCAGGCTTGTCTCATCTGCTGGCACTGGATTCTTCTATGTGAAGAAGAAGAATCCTCGGAAAATGTTAGAGAAGCTCGAGTTCCGGAAATATGACCCTCGGGTAAATCGTCATGTTCTGTTCACAGAGGCAAAGATGAAGTGA 306 46.73 MVITCHRFSHSAIKKPFCEVALQTRESLKRPYFPLPLSILPGMGDKKKKAASIFIRLVSSAGTGFFYVKKKNPRKMLEKLEFRKYDPRVNRHVLFTEAKMK* 102
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3864994 3870165 - Vvi5g382 Vvi5g382 786524

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g382 101 TIGRFAM rpmG_bact: ribosomal protein bL33 47 101 IPR001705 GO:0003735|GO:0005840|GO:0006412
Vvi5g382 101 Hamap 50S ribosomal protein L33 [rpmG]. 46 99 IPR001705 GO:0003735|GO:0005840|GO:0006412
Vvi5g382 101 Gene3D Ribosomal protein L33 46 99 IPR038584 -
Vvi5g382 101 Pfam Ribosomal protein L33 55 99 IPR001705 GO:0003735|GO:0005840|GO:0006412
Vvi5g382 101 PANTHER 54S RIBOSOMAL PROTEIN L39, MITOCHONDRIAL 47 101 - -
Vvi5g382 101 SUPERFAMILY Zn-binding ribosomal proteins 47 99 IPR011332 GO:0006412
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g382 K02913 RP-L33, MRPL33, rpmG; large subunit ribosomal protein L33 - vvi:100244166 120.553
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g382 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .