Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g384 ATGATTTTGGAGGAGAGTGCCCCGGGAAAGAAGAGGGTCCGGACTGCGCGACCAGCCGCGGGAAGGGCTCGGTGTCAGGTGACGGGTTGTGAGGCTGATATTAGTGAGCTGAAAGGGTATCATCGACGGCATAGGGTTTGTCTCCGTTGCGCGAATGCTAGTGTCGTTATTCTGGATGGACAGAATAAGCGTTACTGTCAACAGTGTGGGAAGTTTCACATCTTGTCAGATTTTGATGAGGGTAAACGCAGTTGTCGAAGAAAATTAGAGCGTCACAATAATAGACGACGTAGAAAACCTATTGATTCTGGAGGCACGGTTGAAAAGGAAATTCAAGGGGAACTTATATCTGAAGATGCTGCTCATGATGGTGAAGCAGATAAAGATAGTTTGTGCTTGAGCAGCCAGCTAATCGAAAGGGAACCATTGTTGGAGTCTGAAGATGGACATTTTTCCACCCTTTGCTCAGTGCCTGGTTCCCAGAATATTCAGAGCGATGGTATTGTATCTTTTGTGGGTTCTGGAGAAGCCCAAATTGATGGAGGCAAAAATGATTCCAAATATACCCTTTCTTCATCTTACTGTGATAATAAGAGTGCTTACTCATCCCCCTGCCCTACGGGTCGGATTTCGTTCAAGCTCTATGATTGGAATCCTGCTGAATTTCCCAGACGACTTAGGCACCAAATTTTCCAGTGGTTGGCTAGCATGCCTATTGAGTTGGAGGGCTATATCCGTCCTGGGTGTATCATCTTAACAATTTTTATTGCAATGCCAAAGTTTATGTGGGACAAGTTGTTGGAAGATCCTGCTTCATATGTACATGACTTTGTTGCTGCACCTGGAAAGATGCTATCTGGAAGAGGCAATGTACTTGTTTATCTAAACAACATGATTTTTCGTGTTACAGAAGATGGTACTTCTGTGATGAAAGTTGAGGTAAAGATGCAAGCCCCAAAGCTCCACTATGTGCATCCTAACTGTTTTGAGGCTGGTAAGCCCATGGAGTTTGTTGCTTGTGGAAGTAACCTGCTTCGACCTAAATTTAGGTTTCTAGTATCTTTCGCTGGAAAGTATCTGTCTTATGATTACCATGTTGTGTTCCCTCGGGGTAAGATTGAAGGTGACACTGCTGGTAGTTTGGACCATGAATTCTGCAAGATATACATCCCTCATACTGAGCCCAATGCCTTTGGCCCTGCATTTATTGAGGTTGAGAATGACCATGGCTTATCCAACTTCATTCCTATTTTTATTGGAGACAAAGAAATTTGTTCGGAAATGAAGATATTGCAGCATAGATTTGATGCATCTCTCTGTTCCAAAGGATCACAGTTTTTTGCTAAAGATCCATCTGACTCGTGCAAGGTTTCAGTATTGGGACAAACCGCATTTTCTGAATTTATTTTAGATATAGCCTGGATACTCAAGGAGCCTGCATCGGAGAATATTCAGCGAAGTTTAACCTCTTCACATATTCAGAGATTTAATTGTTTACTGAACTTTCTAATACACAATGAGTCGACCACCATCTTGGAGAAAATATTACAATCTCTGAAGATTTTGATAGATAACATGGACTTAAACATTCAGGTTAATGGCGCCACTGATACTGATTTGAGGCTGCTTTATAAGTACATGGATCATGCTAGTAAGATTCTTCATCAGAAACTTCACAGTAGTGGGGGTTTAGTACTGCATTCTGGAAATTCTGTGACAAAAGGGGATCATCCTAGCTGCTTCCACAACAACATGCTCCCTGTTGTCTTTCCCCCTGAGGACACAAAAATAAGCGCAAACGGTGGGTTGGCAGCAATGGCAAGTTCAACTTCTACAGATAGAAGTGAAACTGTCTCACTATTGAACAGAGAGGTTGTTATGAATATGAACTCAATCAAGGAACAGCCAAGGAAATCCTGCAGCCTTATTTTCTCAAAGAAAGCCATGACCTCACGACCTTTTCTTTATATGATTGTTGCCGCTGCCGCTTGTTTTGGGATATGTGCTGTCCTTCTCCACCCTCATGAGGTTGGCAAATTGGCAGTGTCTATCCGCAGGTGTTTGTTTGACAATTCTTAG 2079 42.66 MILEESAPGKKRVRTARPAAGRARCQVTGCEADISELKGYHRRHRVCLRCANASVVILDGQNKRYCQQCGKFHILSDFDEGKRSCRRKLERHNNRRRRKPIDSGGTVEKEIQGELISEDAAHDGEADKDSLCLSSQLIEREPLLESEDGHFSTLCSVPGSQNIQSDGIVSFVGSGEAQIDGGKNDSKYTLSSSYCDNKSAYSSPCPTGRISFKLYDWNPAEFPRRLRHQIFQWLASMPIELEGYIRPGCIILTIFIAMPKFMWDKLLEDPASYVHDFVAAPGKMLSGRGNVLVYLNNMIFRVTEDGTSVMKVEVKMQAPKLHYVHPNCFEAGKPMEFVACGSNLLRPKFRFLVSFAGKYLSYDYHVVFPRGKIEGDTAGSLDHEFCKIYIPHTEPNAFGPAFIEVENDHGLSNFIPIFIGDKEICSEMKILQHRFDASLCSKGSQFFAKDPSDSCKVSVLGQTAFSEFILDIAWILKEPASENIQRSLTSSHIQRFNCLLNFLIHNESTTILEKILQSLKILIDNMDLNIQVNGATDTDLRLLYKYMDHASKILHQKLHSSGGLVLHSGNSVTKGDHPSCFHNNMLPVVFPPEDTKISANGGLAAMASSTSTDRSETVSLLNREVVMNMNSIKEQPRKSCSLIFSKKAMTSRPFLYMIVAAAACFGICAVLLHPHEVGKLAVSIRRCLFDNS* 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3885148 3896071 + Vvi5g384 Vvi5g384 786526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g384 692 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 7 5 689 - -
Vvi5g384 692 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 5 689 IPR044817 GO:0003677
Vvi5g384 692 SUPERFAMILY SBT domain 23 103 IPR036893 GO:0003677|GO:0005634
Vvi5g384 692 Pfam SBP domain 25 99 IPR004333 GO:0003677
Vvi5g384 692 Gene3D - 17 86 IPR036893 GO:0003677|GO:0005634
Vvi5g384 692 ProSiteProfiles Zinc finger SBP-type profile. 22 99 IPR004333 GO:0003677
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14846 PF03110 SBP 6.50E-28 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g384 - - vvi:100251222 1394.79