Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g389 ATGGTGTCTTCTCTGCAGTTCCTCCTTTTGCTTTGGATCTCATCGACCATACTCGAGTTTTCGAGCTCGTATGCGGATGCAGCTGGCTCCAACGTCTCTGCCGCTAAAGTCAGGCAGATTTCTTGGAAACCGAGAGCTTTCGTGTACGAGGGTTTTCTTTCGGAAGAAGAATGCGATCATTTGATATCTCTTGCCAAATCAGAGCTGAAGAGATCTGCTGTCGCAGATAATGTGTCAGGGAAGAGCAGGCTCAGCGAAGTTAGGACTAGCTCCGGGATGTTTATCGGAAAGGGGAAGGATCCTATTGTTGCGGGAATAGAGGACAAGATTGCAGCGTGGACATTTCTTCCAAAAGATAATGGGGAAGACATGCAAGTGTTGAGATATGAGCCTGGACAGAAATATGACGCACACTACGATTATTTTGTTGACAAGGTTAATATTGCTCGTGGTGGACATCGCATAGCAACTGTACTCATGTATCTTTCTGATGTGGTCAAAGGTGGTGAAACTGTTTTTCCCATGGCAGAGGAACCTTCACGCCGTAAACCACTTCCAACAAATGATGATTTATCCGAGTGTGCAAGAAAAGGAATTGCAGTAAAACCACGAAAAGGGGATGCTCTTCTTTTCTTCAGCCTTCACCCAACTGCCATTCCTGATCCCATGAGTCTCCATGGAGGGTGCCCTGTGATTGAAGGTGAGAAATGGTCAGCGACAAAGTGGATACATGTGGACTCCTTTGACAAGATCTTAAAACCCGGTGGGAACTGTACTGATGAGAATGACAGTTGTGAGAGATGGGCTGCCCTTGGGGAATGCACCAAGAACCCAGAATACATGCTAGGATCTTCAGACCTTCCGGGTGCCTGTAGAAGGAGTTGCAAGGTATGCTAG 897 46.82 MVSSLQFLLLLWISSTILEFSSSYADAAGSNVSAAKVRQISWKPRAFVYEGFLSEEECDHLISLAKSELKRSAVADNVSGKSRLSEVRTSSGMFIGKGKDPIVAGIEDKIAAWTFLPKDNGEDMQVLRYEPGQKYDAHYDYFVDKVNIARGGHRIATVLMYLSDVVKGGETVFPMAEEPSRRKPLPTNDDLSECARKGIAVKPRKGDALLFFSLHPTAIPDPMSLHGGCPVIEGEKWSATKWIHVDSFDKILKPGGNCTDENDSCERWAALGECTKNPEYMLGSSDLPGACRRSCKVC* 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3947363 3955722 - Vvi5g389 Vvi5g389 786531

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g389 298 ProSiteProfiles ShKT domain profile. 258 298 IPR003582 -
Vvi5g389 298 Pfam 2OG-Fe(II) oxygenase superfamily 124 244 IPR044862 -
Vvi5g389 298 Gene3D q2cbj1_9rhob like domain 36 245 - -
Vvi5g389 298 SMART p4hc 44 244 IPR006620 GO:0005506|GO:0016705|GO:0031418
Vvi5g389 298 Pfam ShK domain-like 257 298 IPR003582 -
Vvi5g389 298 PANTHER PROLYL 4-HYDROXYLASE SUBUNIT ALPHA-LIKE PROTEIN 1 298 - -
Vvi5g389 298 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 120 245 IPR005123 -
Vvi5g389 298 PANTHER PROLYL 4-HYDROXYLASE ALPHA SUBUNIT 1 298 IPR045054 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g389 K00472 P4HA; prolyl 4-hydroxylase [EC:1.14.11.2] - vvi:100245913 612.068
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g389 . . . . . Bpe14g01160 . . Cmo08g01163 Cmo17g00279 Cma06g01451 Cma14g01654 Car06g01253 . . Cpe08g00224 Cpe03g01399 Bhi01g00918 . . . . . . Cla06g00523 Cam06g0562 Cec06g0562 Cco06g0569 Clacu06g0550 Cmu06g0546 Cre06g1315 Cone14ag0801 Cone15ag0800 . . Lsi05g01486 . Chy11g01452 Cme06g00675 Blo02g00567 Blo07g00195 Bda11g00550 . . Bpe13g00639 . . . Cmo06g01452 Cmo14g01700 Cma08g01191 Cma17g00291 Car08g01068 Car17g00267 Cpe12g00243 Cpe17g00107 Bhi12g01764 . . . . . . . . . . . . . . Csa03g01400 Chy06g00643 Cme11g01957
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002376 1 2 2 2 2 2 3 2 2 2 2 2 3 2 2 4 2 2 4 2 2 1 1 2 2 2 1 3 2 1 62